Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P03
(961 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 36 7e-04
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 0.62
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 5.4
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 7.2
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 35.5 bits (78), Expect = 7e-04
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 819 GGPPPXTGPXXPPLRPPXXPPPXPPXXXPPXGXGGAXPPXPP 944
G P P P P P PP P PP G GA P P
Sbjct: 19 GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60
Score = 29.5 bits (63), Expect = 0.047
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 856 PXGPPXXXPXXPPXXXPPGGXXGXPPPPPP 945
P P P P PPGG G PP P
Sbjct: 31 PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60
Score = 27.5 bits (58), Expect = 0.19
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 854 PPXAPXGPXPXAPPXXPPXGXGXGXPPXPPPXGXP 958
P +P P +PP P G G PP PP P
Sbjct: 27 PHQSPQAPQRGSPPN-PSQGPPPGGPPGAPPSQNP 60
Score = 26.2 bits (55), Expect = 0.44
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 881 PXAPPXXPPXGXGXGXPPXPPPXGXPP 961
P AP P G PP PP G PP
Sbjct: 31 PQAPQRGSPPNPSQGPPPGGPP-GAPP 56
Score = 25.8 bits (54), Expect = 0.58
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 856 PXGPPXXXPXXPPXXXPPGGXXGXPPPPPP 945
P P P P PP G PP PP
Sbjct: 23 PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52
Score = 24.2 bits (50), Expect = 1.8
Identities = 10/28 (35%), Positives = 10/28 (35%)
Frame = +2
Query: 875 PXPXAPPXXPPXGXGXGXPPXPPPXGXP 958
P P P P G PPP G P
Sbjct: 25 PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52
Score = 23.8 bits (49), Expect = 2.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 644 PPXPRXXPPPPXRXXAPP 697
PP P PPP APP
Sbjct: 39 PPNPSQGPPPGGPPGAPP 56
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.0 bits (47), Expect(2) = 0.62
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 928 PPPPPPR 948
PPPPPPR
Sbjct: 1859 PPPPPPR 1865
Score = 20.6 bits (41), Expect(2) = 0.62
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 904 PPGGXXGXPPPPP 942
P G PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 3.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 769 PPPPPPXP 792
PPPPPP P
Sbjct: 1355 PPPPPPPP 1362
Score = 23.4 bits (48), Expect = 3.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 772 PPPPPXPP 795
PPPPP PP
Sbjct: 1355 PPPPPPPP 1362
Score = 23.4 bits (48), Expect = 3.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 775 PPPPXPPP 798
PPPP PPP
Sbjct: 1355 PPPPPPPP 1362
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.6 bits (46), Expect = 5.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 263 PXHXGPPPPPP 295
P PPPPPP
Sbjct: 338 PPKPAPPPPPP 348
Score = 22.6 bits (46), Expect = 5.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 769 PPPPPPXPPP 798
PP P P PPP
Sbjct: 338 PPKPAPPPPP 347
Score = 22.6 bits (46), Expect = 5.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 769 PPPPPPXPPP 798
P P PP PPP
Sbjct: 339 PKPAPPPPPP 348
Score = 22.2 bits (45), Expect = 7.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 644 PPXPRXXPPPP 676
PP P PPPP
Sbjct: 338 PPKPAPPPPPP 348
Score = 22.2 bits (45), Expect = 7.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 928 PPPPPPRXXXP 960
PPPPPP P
Sbjct: 343 PPPPPPSSSGP 353
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 7.2
Identities = 10/32 (31%), Positives = 10/32 (31%)
Frame = -1
Query: 958 GXPXGGGXGGXAPPXPXGGXXXGGXGGGXXGG 863
G P GG G G GG GG
Sbjct: 20 GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,255
Number of Sequences: 438
Number of extensions: 9125
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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