Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P02
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 48 1e-06
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 40 6e-04
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.054
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 32 0.13
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.29
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 31 0.29
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 28 2.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.7
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 3.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 3.6
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.2
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 6.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 6.2
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 8.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 8.2
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 48.4 bits (110), Expect = 1e-06
Identities = 30/127 (23%), Positives = 50/127 (39%)
Frame = +2
Query: 401 LKCDECGKLFKNQDEIEYHAAKTNHSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 580
LKC EC KL + + E+H+ KT+H F
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEK 62
Query: 581 XXXXXXXXXXXXXXXXIKSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQI 760
KS E A +++Q+Q + +++ R +K ED + R+++ A+I
Sbjct: 63 ERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAEI 122
Query: 761 EADKQAR 781
E DK+ R
Sbjct: 123 ERDKKRR 129
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 163 IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 279
I+ L MGFP R ++AL T E AM WL H ED
Sbjct: 582 IEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMED 620
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.1 bits (72), Expect = 0.054
Identities = 17/55 (30%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = +2
Query: 632 KSGKELQDAKQRLQEQEMQKLVEQR-RMEKI--EDQKARERVRAQIEADKQARKL 787
++ +E +QRL+E+E ++++E+R R EK+ E+++ R R + E++++ R+L
Sbjct: 681 EADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRL 735
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +2
Query: 659 KQRLQEQEMQKLVEQRRMEKIEDQKARER----VRAQIEADKQ 775
+QRL+ ++ +K E R ++ E QK +ER + Q EAD++
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADRE 685
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 163 IQTLIEMGFPKERAEKALAVTNY 231
+Q L+ MGFP+E+A AL TNY
Sbjct: 794 LQELLSMGFPREKAVIALEATNY 816
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/52 (25%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 650 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARE-RVRAQIEADKQARKLAALGK 802
++ +QR++E+E + E++R+ ++E+ + E R++ + + K+ ++ A GK
Sbjct: 261 EEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGK 312
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 638 GKELQDAKQRLQE-QEMQKLVEQRRMEKIEDQKARERVRAQIEADKQ 775
GK+ +K++ +QK++E++R + E+Q+ RE E +K+
Sbjct: 234 GKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIREEEARIAEEEKR 280
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 632 KSGKELQDAKQRLQEQEM-QKLVEQRRMEKIEDQKARERVRAQIE--ADKQARKLAALGK 802
++GKE + KQR QE+ + QK E+ + EK Q+ +E+ + E A K+ ++L L K
Sbjct: 73 EAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEK 132
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = +2
Query: 629 IKSGKELQDAKQ--RLQEQEMQKLVEQRRMEKIEDQKAR--ERVRAQIEADKQARK 784
+K KE Q +Q +L+EQE + + +EK+E ++ R E+ R + E D++ R+
Sbjct: 98 LKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLRE 153
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 632 KSGKELQDA-KQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKL 787
K KEL+ K+R++ QE Q+ E+R +K+ +++ +R+R + +K+ ++L
Sbjct: 122 KKMKELEKLEKERIRLQEQQRRKEERD-QKLREKEEAQRLRQEQILNKERQQL 173
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 650 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKLAALG 799
++AK+R Q + +KL QRR+++ D++ ++ A+K A + A +G
Sbjct: 828 REAKEREQREMAEKLERQRRIQQERDEEISRKL-----AEKAAARRANIG 872
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/39 (25%), Positives = 26/39 (66%)
Frame = +2
Query: 662 QRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQA 778
Q +Q+Q+ Q+ +Q++ ++ + Q+ +++ + Q + KQA
Sbjct: 254 QHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQA 292
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +2
Query: 647 LQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKL 787
+++ K RL E++++++V++ ED+ +ER+ A+ + A L
Sbjct: 531 IKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSL 577
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 235 PYNWSRLKLFLLVLWEN-PSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLLS 80
P W +LK +++LW++ P+ S + + + + +M++ K T +F ++S
Sbjct: 344 PTEWDKLKPTIILLWKDFPNYSTLLSIMQERNSKAMYMYKPVTSSIRFLQIIS 396
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 190 PKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSXSQAGESSA-PVP 339
P RA + L +N PAME L A LA+ S+P S SSA P+P
Sbjct: 304 PPFRASEPLPSSNIIP-NPAMERLKNGASKLAIESQPFKSAEPLSSAIPLP 353
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 650 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARER 745
Q AKQ Q+++ L +R +ED +A+E+
Sbjct: 623 QKAKQLKQQEDEDNLKRKRSESDVEDNEAKEK 654
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 208 FLLVLWENPSRSMSVFLPLFKFANSMFIVK 119
FL VLW NP +S+ + SMF ++
Sbjct: 353 FLWVLWRNPLPQLSIISHIILSPTSMFDIR 382
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 653 DAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQARKLAALG 799
D RL+ QE+ + EK+ ++ + R +IE Q++ AA G
Sbjct: 459 DQHIRLKSQELDAFAQATYREKLYMKRECQNARKKIEQQLQSKDTAANG 507
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 395 KSLKCDECGKLFKNQDEIEYH 457
K +C+ C K +KN + ++YH
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH 417
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 638 GKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIE 763
G+EL +++ RL+ +QKLV Q+R + + + IE
Sbjct: 146 GEELSNSQYRLECAAIQKLVAQKRANRRSSKSTLKNSANDIE 187
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 395 KSLKCDECGKLFKNQDEIEYHAAKTNHSS 481
KS C EC K FK + + H ++ H+S
Sbjct: 421 KSFVCPECSKKFKRSEHLRRH-IRSLHTS 448
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 650 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVR-AQIEADKQARKLAAL 796
Q A+ L+EQ +K + R K E +ER + A+ E ++ +K+A +
Sbjct: 533 QQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAEI 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,762
Number of Sequences: 5004
Number of extensions: 45882
Number of successful extensions: 173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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