Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P02
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.30 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.92 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 641 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQIEADKQ 775
           K+L+ A Q+LQEQ    +++Q  + +  D+K       Q+   +Q
Sbjct: 140 KKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQ 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +2

Query: 659  KQRLQEQEMQKLVEQRRMEKIEDQKARER 745
            +Q+ Q+Q+ Q+  +Q++ ++ +  +ARER
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQARER 1239



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 647 LQDAKQRLQEQEMQKLVEQRRMEKIEDQKAR-ERVRAQIEADKQARKLAA 793
           +QD  +  Q+Q+ Q   +QR+ ++ E+++ R + ++ ++  D+ A   AA
Sbjct: 156 VQDHHRPYQQQQQQ---QQRQQQRQEERRLRPDEIKVEVGEDEFANGGAA 202


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 624 IESSLVKNYKMPSNDFKSKRCKNW 695
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 624 IESSLVKNYKMPSNDFKSKRCKNW 695
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 624 IESSLVKNYKMPSNDFKSKRCKNW 695
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 205 LLVLWENPSRSMSVFLPLFKFANSMFIVKLATFY 104
           + +L + PSRS ++   L  F+N+++I+ + + +
Sbjct: 544 ITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVH 577


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 398 SLKCDECGKLFKNQDEI 448
           +LKCD+C     N +E+
Sbjct: 147 NLKCDKCSTYQSNGEEV 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,771
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)