Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O24
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    36   0.008
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.17 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    31   0.30 
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    30   0.39 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.68 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   1.2  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 802  EFLGDAIIDFLVTSHIFENCXXLKPGEMTDLK 897
            EFLGDA++D+++  ++++       GE+TD K
Sbjct: 1123 EFLGDAVLDYIIVQYLYKKYPNATSGELTDYK 1154



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 455  YVHSQAVADKSIADSVEALIGTYLLSGGILAAVKLLEWMEV 577
            Y   Q ++ K IAD VEA IG  LL  G+ +A+K+ + + V
Sbjct: 1011 YAVLQKLSVKRIADMVEASIGACLLDSGLDSALKICKSLSV 1051


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 26/94 (27%), Positives = 45/94 (47%)
 Frame = -1

Query: 609 SMSAKLSCGGNTSIHSSSFTAANIPPLSRYVPIRASTESAIDLSATACECT*HCIEFWAQ 430
           S S+  S   ++++ SSS + ++IP  S      +S+ S+   S+TA   +         
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSS--SSSSIIS 274

Query: 429 PSGSTSAMPFWKLFITDSQLSSLNSPVITSSSVN 328
            S S+S+ P        S  SS +SP  TSS+++
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 27/117 (23%), Positives = 52/117 (44%)
 Frame = -1

Query: 678 FSKKSISASVAKFFDNGVCTGLWSMSAKLSCGGNTSIHSSSFTAANIPPLSRYVPIRAST 499
           FS  S S S ++   +   +  +S +A  S   +    SS  ++++ P  S    + +S+
Sbjct: 175 FSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSS 234

Query: 498 ESAIDLSATACECT*HCIEFWAQPSGSTSAMPFWKLFITDSQLSSLNSPVITSSSVN 328
            S   + +T+   +       +  S ST++       I  S  SS +SP  TSS+++
Sbjct: 235 LSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 223 SPSGMMELRKPSIVIFQSRNKMCSDIDFETFFAQLKSIVHFIYYLNE 83
           S S M++L     VI   RN MCS +++ T++        F+  LN+
Sbjct: 90  SVSDMLQLDDRDKVIVSERNSMCSTVNYPTWWDSCGGFPGFLLSLND 136


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -3

Query: 286 SGKSRQILVHRYLNLNYVKL-RSPSGMMELRKPSIVIFQSRNKMCSDIDFE 137
           +G + Q+L++ + N   +++ R+P+  + L +P   IFQ+ NK CS  D E
Sbjct: 296 TGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQP---IFQAFNKKCSRFDHE 343


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 23/81 (28%), Positives = 43/81 (53%)
 Frame = -1

Query: 576 TSIHSSSFTAANIPPLSRYVPIRASTESAIDLSATACECT*HCIEFWAQPSGSTSAMPFW 397
           TS++S++ T+A+  PL+      A++ S+  L+ +A   T   +   A    ++S +P  
Sbjct: 360 TSVNSTTATSASSTPLTSVNSTSATSASSTPLT-SANSTTSTSVSSTAPSYNTSSVLP-- 416

Query: 396 KLFITDSQLSSLNSPVITSSS 334
              ++ + LSS NS   TS+S
Sbjct: 417 TSSVSSTPLSSANSTTATSAS 437



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 23/81 (28%), Positives = 43/81 (53%)
 Frame = -1

Query: 576 TSIHSSSFTAANIPPLSRYVPIRASTESAIDLSATACECT*HCIEFWAQPSGSTSAMPFW 397
           TS++S++ T+A+  PL+      A++ S+  L+ +A   T   +   A    ++S +P  
Sbjct: 474 TSVNSTTATSASSTPLTSVNSTSATSASSTPLT-SANSTTSTSVSSTAPSYNTSSVLP-- 530

Query: 396 KLFITDSQLSSLNSPVITSSS 334
              ++ + LSS NS   TS+S
Sbjct: 531 TSSVSSTPLSSANSTTATSAS 551


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -1

Query: 699 STSVLELFSKKSISASVAKFFDNGVCTGLWSMSAKLSCGGNTSIHSSSFTAANIPPLSRY 520
           ST+     S  S S+S +    +   +   S S+  S   ++S  SSS ++++    S  
Sbjct: 148 STTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 207

Query: 519 VPIRASTESAIDLSATACECT*HCIEFWAQPSGSTSAMPFW--KLFITDSQLSSLNSPVI 346
           VPI +ST S+   S+++   +       ++PS S+S +       FI+   ++  +S   
Sbjct: 208 VPITSSTSSSHSSSSSSSSSS----SSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSS 263

Query: 345 TSSSV 331
           TSS V
Sbjct: 264 TSSEV 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,826
Number of Sequences: 5004
Number of extensions: 78445
Number of successful extensions: 265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)