Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O24
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    74   2e-13

>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
 Frame = +2

Query: 467  QAVADKSIADSVEALIGTYLLSGGILAAVKLLEWMEVFPPQDNFADMLHKPVQTPLSKNL 646
            Q ++DKSIAD+VEALIG +LL+ G    +K++ WM +   Q +    +  P+   +    
Sbjct: 1501 QHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPT 1560

Query: 647  ATEADIDFLLNNSR----TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYER 799
               A ++FL N  +    T +E+ + Y FK+  +L+ A +H+SYI NR+T  Y+R
Sbjct: 1561 NPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQR 1615



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +1

Query: 802  EFLGDAIIDFLVTSHIFENCXXLKPGEMTDLKXA 903
            EFLGDA++D+++T ++FE+     PG +TDL+ A
Sbjct: 1617 EFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSA 1650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,064,140
Number of Sequences: 27780
Number of extensions: 431326
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)