Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O24
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.31 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.31 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 326 QFTEEEVMTGELSEESWESVMN-NFQNGIAEV 418
           +F +EE++ GELSE+  E V+N N ++ +A V
Sbjct: 423 KFFDEELILGELSEKLREDVINYNCRSLVASV 454


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 326 QFTEEEVMTGELSEESWESVMN-NFQNGIAEV 418
           +F +EE++ GELSE+  E V+N N ++ +A V
Sbjct: 391 KFFDEELILGELSEKLREDVINYNCRSLVASV 422


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = -3

Query: 262 VHRYLNLNYVKLRSPSGMMELRKPSIVIFQSRNKMCSDIDFETFFAQLKSIVHFIYY 92
           +H YL  +Y ++R+PS + E      +    R+K    + +     Q++ +    Y+
Sbjct: 103 LHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYT--MGQIREVARHFYH 157


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 235 HSSNLNIYVQVFVEIFPKTTTDSSNIL 315
           H++ LN+Y   ++ + PK T  +   L
Sbjct: 510 HAARLNVYGLPYIRLIPKVTAVAGETL 536


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 235 HSSNLNIYVQVFVEIFPKTTTDSSNIL 315
           H++ LN+Y   ++ + PK T  +   L
Sbjct: 510 HAARLNVYGLPYIRLIPKVTAVAGETL 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,628
Number of Sequences: 438
Number of extensions: 5005
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)