Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O23
         (998 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339...    30   2.5  
12_01_0252 + 1868670-1869200,1870167-1871120                           30   3.3  
11_01_0252 + 1934505-1935032,1936001-1936957                           30   3.3  
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     29   5.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   7.7  

>03_03_0145 +
           14833043-14833113,14833544-14833662,14833834-14833991,
           14834147-14834587
          Length = 262

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 869 PVXPDXGXLFPXXTPLDPHPVKT-XIXPLAXP 961
           PV P  G +FP   P+ P P+ T  + PL  P
Sbjct: 162 PVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQP 193


>12_01_0252 + 1868670-1869200,1870167-1871120
          Length = 494

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 713 GXGNXGGGXGGXXXXGGKRXGXSLXVPVGXFRH 615
           G G+ GGG GG    GG      L +PV   R+
Sbjct: 80  GGGSGGGGRGGAGGGGGAPATPELVIPVSSIRY 112


>11_01_0252 + 1934505-1935032,1936001-1936957
          Length = 494

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 713 GXGNXGGGXGGXXXXGGKRXGXSLXVPVGXFRH 615
           G G+ GGG GG    GG      L +PV   R+
Sbjct: 79  GGGSGGGGRGGAGGGGGAPATPELVIPVSSIRY 111


>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 594 PTPQXQKVAEXPDXXX*RXPXXFPPXXXPPS-XPPPXVXXPXP 719
           P+PQ Q+VA  P       P  F P   P    PPP V  P P
Sbjct: 67  PSPQQQRVASPPP----TIPVKFSPPAAPVKVPPPPPVQVPPP 105


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +3

Query: 585 QKXPTPQXQKVAEXPDXXX*RXPXXFPPXXXPPSXPPPXVXXPXP 719
           +K P+P     A  P       P    P   PP  PPP    P P
Sbjct: 532 RKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLP 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,797,493
Number of Sequences: 37544
Number of extensions: 279895
Number of successful extensions: 2008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)