Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O23
         (998 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    30   3.0  
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 594 PTPQXQKVAEXPDXXX*RXPXXFPPXXXPPSXPPPXVXXPXP 719
           P+PQ  +V++ P       P   PP   P S PPP    P P
Sbjct: 485 PSPQPAEVSKSPPP-----PPPLPPIATPSSVPPPPPPPPPP 521


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +3

Query: 843 LGLXXQKPPRXXXTXGPFSRXXPPWI---PTRLKXKFXPXPXPXFPGXPXXV 989
           +G    + P    T  P     PPW    P     ++ P P P  PG P  V
Sbjct: 161 IGAVDMRKPVETKTMSPEEAALPPWRRMNPLNADAEWKPPPPPPMPGKPPIV 212


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +3

Query: 843 LGLXXQKPPRXXXTXGPFSRXXPPWI---PTRLKXKFXPXPXPXFPGXPXXV 989
           +G    + P    T  P     PPW    P     ++ P P P  PG P  V
Sbjct: 161 IGAVDMRKPVETKTMSPEEAALPPWRRMNPLNADAEWKPPPPPPMPGKPPIV 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,062
Number of Sequences: 27780
Number of extensions: 200846
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)