Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O22
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 662 PPXXXGGXXXNPPPXGGGGTXXPPPP 585
           P    GG    PPP G  G   PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -3

Query: 664 PPPPXGGXXXKTPPPXG--GGXPXXPPP 587
           PP P  G     PPP G  G  P  PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -3

Query: 673 GGXPPPPXGGXXXKTPPP--XGGGXPXXPPP 587
           GG PPPP        PPP   G G P  PPP
Sbjct: 759 GGPPPPP--------PPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 673 GGXPPPPXGGXXXKTPPPXGGGXPXXPPP 587
           G  PPPP  G     PPP     P  PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPP-----PPPPPP 783



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 696 PXXPPXGXPPPPXXXXXXFWCXFXXGPPPPP 788
           P  P  G PPPP             GPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGA----GPPPPP 779



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +3

Query: 609 PPPXGGGVXXXXP-PXGGGGXPPXXXXFXXPXXPPXGXPPPP 731
           P P    +    P P  GG  PP          PP   PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 662 PPXXXGGXXXNPPPXGGGGTXXPPPP 585
           PP    G    PPP  G     PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 664  PPPPXGGXXXKTPPPXGGGXPXXPPP 587
            PPPP       + PP   G P  PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +2

Query: 644  PPXGXGGXPPXXXXFXXPXXPPXXXPPPPXXGPRXXLVXFXXXXAPPPP 790
            PP       P       P  PP   PPPP   P    +      APPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP----MPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = -3

Query: 664 PPPPXGGXXXKTP-PPXGGGXPXXPPP 587
           PPPP        P PP G   P  PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 648 PXGGGGXPPXXXXFXXPXXPPXGXPPPP 731
           P G    PP    F  P  PP   PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP--PPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,283
Number of Sequences: 5004
Number of extensions: 26074
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)