Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_O20
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 33 0.30
01_01_1008 - 7987936-7988628,7988923-7989102 32 0.52
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.6
07_01_1201 - 11419851-11419913,11420090-11420311 29 3.7
03_06_0149 - 31987183-31987630,31987813-31987874 29 3.7
08_02_0941 + 22829689-22830012,22830077-22830460 29 6.4
07_03_0705 - 20846810-20848165 29 6.4
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
08_02_0292 - 15420378-15421229 28 8.5
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 33.1 bits (72), Expect = 0.30
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 635 ESSLVRSPVPTLPLTGYCPPFSPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HEP--P 799
+S+ + +PVPTLP++ PF+ G S H + R Y S G V HEP P
Sbjct: 283 QSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIP 342
Query: 800 FSPTAAP-YP 826
P AAP YP
Sbjct: 343 SYPPAAPSYP 352
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 724 RKRHASRRGERRTVSGKRQGRNRRAHEGAFQGETPG 617
R R RRG V+G+ R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -3
Query: 655 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 476
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 475 TCSFLRYPLILWITVLPPLSELIPLAAA 392
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 541 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYR 681
L PP Q+WR+ PTG + +FP G LP A PA R
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 730 AMRKRHASRRGERRTVSGKRQGRNRRAHEGAFQGETP 620
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>08_02_0941 + 22829689-22830012,22830077-22830460
Length = 235
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -3
Query: 811 GRAERGFVHTAQLGAXDLHRTEIPTA*AMRKRHASRRGERRTVSGKRQGRNRRAHEGAFQ 632
G E G V ++G E+ AMR A G+RR SG +GR RR Q
Sbjct: 168 GAGEEGGVARDRVGGEGCRDDELGERYAMRYAGAEEPGQRRR-SGGMRGRRRRRRSKWRQ 226
Query: 631 G 629
G
Sbjct: 227 G 227
>07_03_0705 - 20846810-20848165
Length = 451
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 689 PPFSPSGSVALSH----SSRCRYLSSV*VVRSKLGCVHEPPF 802
PPF P+ S S SS C++L+S + + GCV+ P+
Sbjct: 130 PPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATGCVYYYPY 171
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>08_02_0292 - 15420378-15421229
Length = 283
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 724 RKRHASRRGERRTVSGKRQGRNRRAHEGAFQGETPG 617
R+R A RRGE R+ G R RR + A G G
Sbjct: 51 RRRRARRRGEERSSGGGRSRMRRRTWQRAGGGGMGG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,241,260
Number of Sequences: 37544
Number of extensions: 514607
Number of successful extensions: 1591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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