Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O16
         (890 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033808-1|AAH33808.1|  488|Homo sapiens H2.0-like homeobox prot...    31   7.4  
BC007294-1|AAH07294.1|  488|Homo sapiens H2.0-like homeobox 1 (D...    31   7.4  
AL445423-4|CAH72120.1|  488|Homo sapiens H2.0-like homeobox 1 (D...    31   7.4  
AF217621-1|AAF65541.1|  488|Homo sapiens homeobox protein protein.     31   7.4  
AJ586135-1|CAE51935.2| 1352|Homo sapiens ubiquitin-specific prot...    30   9.8  

>BC033808-1|AAH33808.1|  488|Homo sapiens H2.0-like homeobox
           protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 625 GGNACIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWP 488
           GGN+  F   S  ++S  S     +  GGGA    PAT+P   S P
Sbjct: 430 GGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAP 475


>BC007294-1|AAH07294.1|  488|Homo sapiens H2.0-like homeobox 1
           (Drosophila) protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 625 GGNACIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWP 488
           GGN+  F   S  ++S  S     +  GGGA    PAT+P   S P
Sbjct: 430 GGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAP 475


>AL445423-4|CAH72120.1|  488|Homo sapiens H2.0-like homeobox 1
           (Drosophila) protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 625 GGNACIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWP 488
           GGN+  F   S  ++S  S     +  GGGA    PAT+P   S P
Sbjct: 430 GGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAP 475


>AF217621-1|AAF65541.1|  488|Homo sapiens homeobox protein protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 625 GGNACIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWP 488
           GGN+  F   S  ++S  S     +  GGGA    PAT+P   S P
Sbjct: 430 GGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAP 475


>AJ586135-1|CAE51935.2| 1352|Homo sapiens ubiquitin-specific
           proteinase 31 protein.
          Length = 1352

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 21/62 (33%), Positives = 24/62 (38%)
 Frame = +3

Query: 480 PAKGQEP*KGRVAGVFXXXXXXXRASQKSTLKSEVAKPDRTIKIQAFPPGSSLVRSPVPT 659
           P+    P   R  G F         S  S L SE A PDR      FPPG +   +P P 
Sbjct: 49  PSSPSSPSSARSVGSFMSRVLKT-LSTLSHLSSEGAAPDRGGLRSCFPPGPAAAPTPPPC 107

Query: 660 LP 665
            P
Sbjct: 108 PP 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,952,851
Number of Sequences: 237096
Number of extensions: 2425334
Number of successful extensions: 8355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8355
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)