Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O15
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   0.94 
06_03_0298 - 19272257-19273714                                         29   6.7  
07_01_1201 - 11419851-11419913,11420090-11420311                       28   8.8  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    28   8.8  
02_03_0099 + 15206282-15206917                                         28   8.8  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 700 RELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAN-AAFL 560
           R LSRGK L+S  + R  PP   + + V+ + GGG  G  P    AFL
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGTILAFL 69


>06_03_0298 - 19272257-19273714
          Length = 485

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 610 VQGGGAYGKTPANAAFLRFLA-FCWPFGHM 524
           V GGG   + P++A FLR+L  FC  FG M
Sbjct: 89  VAGGGDARRFPSHAEFLRYLRDFCDAFGLM 118


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 638 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPA 727
           Q+WR+  PTG   + +FP G LP A     PA
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPA 58


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 677 AFPPGKLPRALSCSDPAAYGXPVPXSPXGKRGASHXP 787
           A  P     A + +DPAA G P P  P  KR  S  P
Sbjct: 21  AADPAAAAPAAAATDPAAAGSPSPPLPPRKRRLSPTP 57


>02_03_0099 + 15206282-15206917
          Length = 211

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 563 KGRVCWRFSIGSAPLXEHHKNRRSSQRW 646
           KG       +G  P  ++H++RRS+ RW
Sbjct: 167 KGVEVLHVGVGKGPSLQNHRDRRSTSRW 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,213,492
Number of Sequences: 37544
Number of extensions: 359049
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)