Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O15
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   3.4  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 721 VGTGERTRELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPANAAFLRFLAFC 542
           +G  + TR     K+ + L        +T  S+  +L  G G Y  TPA A F +F+A  
Sbjct: 342 LGAWQDTRRTLDAKKRMGLALEEAGSAITVTSLTSVLSFGIGTYSTTPAIAIFCKFIALA 401

Query: 541 WPF 533
             F
Sbjct: 402 IMF 404


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 671 YQAFPPGKLPRALSCSDPAAYGXPVPXSPXGKRGASHXPXCRYLSSGLGRSAP 829
           Y   PP + PR +      AY  P P  P   +G+S+       S G  RS+P
Sbjct: 123 YYTSPPAQYPRMIPVPHLNAYNMPPPVLPLQPQGSSNQKFSN--SYGNHRSSP 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,480
Number of Sequences: 27780
Number of extensions: 274998
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)