Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O14
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    53   6e-08
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    28   1.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   6.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   6.1  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   8.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLL 411
           ++GL + KAVGV  N  R    +     K  +KPAK L R+   A A  R  YK +   +
Sbjct: 45  FSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRI 103

Query: 412 KANHYRTDLCKATLRRASAILRSQRP 489
               YR DL K ++ RASAIL SQRP
Sbjct: 104 GRTGYRDDLVKVSVARASAILSSQRP 129



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRXQRL 248
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R   L
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGL 48


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 87  PNTTCSQCVRRQKRQ 43
           PNTTC QC+ R+K Q
Sbjct: 264 PNTTCPQCMARRKMQ 278


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 312 VHYCESLPVRVLHDTNSFLV 253
           +HYC S  +  LHDT   LV
Sbjct: 251 IHYCSSSSLSYLHDTERALV 270


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 210 NVTNLHSFRXQRLDSQESCWCRGEP*QEGIHSSVQESK 323
           +++NLH     + DS + C+C G    E  + S    K
Sbjct: 219 SLSNLHENNIDQSDSPQHCYCCGNKFNESYYQSQTAQK 256


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 172 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 62
           FFT ++L     +  S   I     Y Y  HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,441
Number of Sequences: 5004
Number of extensions: 44908
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)