Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O14
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     48   1e-05
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     46   4e-05
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     46   4e-05
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    30   2.8  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   3.7  
09_02_0336 - 7397745-7398308,7398813-7400723                           29   6.5  
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291...    28   8.6  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   8.6  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = +3

Query: 123 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRXQRLDSQES 263
           SL W +++ NN+FLVK+    N K  FSKEPNN+ N+HS++   L ++++
Sbjct: 7   SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKT 56



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLL 411
           ++GL +KK V  V+    K   VV    K  +  KPA    +   +   R+    VK  +
Sbjct: 48  HSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQV 106

Query: 412 KANHYRTDLCKATLRRASAILRS 480
             N+YR DL K  L R SA+ RS
Sbjct: 107 SDNYYRPDLTKPALARLSAVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +3

Query: 126 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRXQRLDSQES 263
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++   L ++++
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKT 56



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYK-KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 414
           ++GL +KK V +  +  +    V+   K K    PAK   +   +   R+    VK  + 
Sbjct: 48  HSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVS 107

Query: 415 ANHYRTDLCKATLRRASAILRS 480
            N+YR DL K  L R S++ RS
Sbjct: 108 DNYYRPDLTKPALARLSSVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +3

Query: 126 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRXQRLDSQES 263
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++   L ++++
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKT 56



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYK-KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 414
           ++GL +KK V +  +  +    V+   K K    PAK   +   +   R+    VK  + 
Sbjct: 48  HSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVS 107

Query: 415 ANHYRTDLCKATLRRASAILRS 480
            N+YR DL K  L R S++ RS
Sbjct: 108 DNYYRPDLTKPALARLSSVYRS 129


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 287 SGFSTTPTAFL*IKPLXPEGVEVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 114
           SG    P   L +K L     +VSHI+ +  E+  D+AL + EC +  + H  Q   H
Sbjct: 343 SGLKMLPLKILPMKLLR---FKVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 105 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLD 251
           T++ SS+L WM+I + N  L +  +    FSK P   T + +FR    D
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFRDALYD 626


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 110 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 211
           KN ++  L+    +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217


>03_06_0096 -
           31627332-31627570,31628467-31628743,31628963-31629118,
           31629205-31629381,31629543-31629745,31630680-31630995
          Length = 455

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 226 TPSGYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR 381
           +PS  + LIH  ++ V ++ +  G   V  + K  R PA    RR  +  AR
Sbjct: 2   SPSSSSSLIHGISISVSDDEEASGRVRVRVRRKRHRHPASAARRRLLRRAAR 53


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 440 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 535
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,002
Number of Sequences: 37544
Number of extensions: 341476
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)