Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O14
         (878 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.                87   8e-17
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...    87   8e-17
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...    87   8e-17
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...    87   8e-17
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...    86   2e-16
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    48   3e-05
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    44   6e-04

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score = 87.0 bits (206), Expect = 8e-17
 Identities = 41/85 (48%), Positives = 54/85 (63%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA 417
           YNGLIH+K VGV    D KG  VV K+    RKPA + +R      AR +L  ++ +++ 
Sbjct: 40  YNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRK 99

Query: 418 NHYRTDLCKATLRRASAILRSQRPI 492
           N YR DL  A +RRASAILRSQ+P+
Sbjct: 100 NKYRPDLRMAAIRRASAILRSQKPV 124



 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESCWCRGEP*QE 293
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L  +++         +
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 294 GIHSSVQESKGYQK 335
           G+   ++   G +K
Sbjct: 59  GVVVVIKRRSGQRK 72


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 87.0 bits (206), Expect = 8e-17
 Identities = 41/85 (48%), Positives = 54/85 (63%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA 417
           YNGLIH+K VGV    D KG  VV K+    RKPA + +R      AR +L  ++ +++ 
Sbjct: 40  YNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRK 99

Query: 418 NHYRTDLCKATLRRASAILRSQRPI 492
           N YR DL  A +RRASAILRSQ+P+
Sbjct: 100 NKYRPDLRMAAIRRASAILRSQKPV 124



 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESCWCRGEP*QE 293
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L  +++         +
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 294 GIHSSVQESKGYQK 335
           G+   ++   G +K
Sbjct: 59  GVVVVIKRRSGQRK 72


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 87.0 bits (206), Expect = 8e-17
 Identities = 41/85 (48%), Positives = 54/85 (63%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA 417
           YNGLIH+K VGV    D KG  VV K+    RKPA + +R      AR +L  ++ +++ 
Sbjct: 40  YNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRK 99

Query: 418 NHYRTDLCKATLRRASAILRSQRPI 492
           N YR DL  A +RRASAILRSQ+P+
Sbjct: 100 NKYRPDLRMAAIRRASAILRSQKPV 124



 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESCWCRGEP*QE 293
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L  +++         +
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 294 GIHSSVQESKGYQK 335
           G+   ++   G +K
Sbjct: 59  GVVVVIKRRSGQRK 72


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 87.0 bits (206), Expect = 8e-17
 Identities = 41/85 (48%), Positives = 54/85 (63%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA 417
           YNGLIH+K VGV    D KG  VV K+    RKPA + +R      AR +L  ++ +++ 
Sbjct: 40  YNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRK 99

Query: 418 NHYRTDLCKATLRRASAILRSQRPI 492
           N YR DL  A +RRASAILRSQ+P+
Sbjct: 100 NKYRPDLRMAAIRRASAILRSQKPV 124



 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESCWCRGEP*QE 293
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L  +++         +
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 294 GIHSSVQESKGYQK 335
           G+   ++   G +K
Sbjct: 59  GVVVVIKRRSGQRK 72


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 85.8 bits (203), Expect = 2e-16
 Identities = 40/85 (47%), Positives = 54/85 (63%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA 417
           YNGLIH+K VGV    D KG  VV K+    RKPA + +R      AR +L  ++ +++ 
Sbjct: 40  YNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRK 99

Query: 418 NHYRTDLCKATLRRASAILRSQRPI 492
           N YR DL  A +RRASAILR+Q+P+
Sbjct: 100 NKYRPDLRMAAIRRASAILRTQKPV 124



 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRLDSQESCWCRGEP*QE 293
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L  +++         +
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 294 GIHSSVQESKGYQK 335
           G+   ++   G +K
Sbjct: 59  GVVVVIKRRSGQRK 72


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 48.4 bits (110), Expect = 3e-05
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 492
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +3

Query: 114 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRXQRL 248
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFR   L
Sbjct: 9   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGL 51



 Score = 35.5 bits (78), Expect = 0.26
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +1

Query: 238 YNGLIHKKAVGVVENPDRKGFTVVYKK 318
           YNGLIH+K VGV    D KG  VV K+
Sbjct: 48  YNGLIHRKTVGVEPAADGKGVVVVIKR 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,466,385
Number of Sequences: 237096
Number of extensions: 1874268
Number of successful extensions: 14229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14223
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)