Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O13
         (994 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +2

Query: 800 PPPXPXXPGTLFPGXSFPXLXTPLGGXXLVXPPPXXXXPPXXGFXGXGGXPNXGP 964
           PPP P  P  + P  +   +  P     +  PPP    PP  G  G G  P   P
Sbjct: 732 PPPPP--PAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
 Frame = +2

Query: 773 PPGXPXPXVPPPXPXXPGTLFPGXSFPXLXTP---LGGXXLVXPPPXXXXPP 919
           PP  P    PPP P  PG    G   P    P    GG     P P     P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 758  PXXXSPPGXPXPXVPPPXPXXPGTLFPGXSFPXLXTPLGGXXLVXPP 898
            P   +P G P   VP P    P    P    P +  P  G   V PP
Sbjct: 1150 PPVPAPSGAPP--VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +2

Query: 710 GAXRGGDPXTGXLGVFPXXXSPPGXPXPXVPPPXPXXPGTLFPGXSFP 853
           G   GG P    +G      +PP  P P  P      P +  P  S P
Sbjct: 103 GLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIP 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,367
Number of Sequences: 5004
Number of extensions: 22745
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)