Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O11
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    31   0.29 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    28   1.6  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   6.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   8.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +2

Query: 161 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 340
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P  + 
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351

Query: 341 EPQIQQEAP 367
              +    P
Sbjct: 352 TTPVTPTVP 360



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +2

Query: 161 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 340
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P  + 
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405

Query: 341 EPQIQQEAP 367
              +    P
Sbjct: 406 TTPVTPTVP 414


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 233 PPSATSTFSHGQGDEPKATNGTSVA-TNGQSTPKESPEPQIQQE 361
           PP++TS  S+G G  P+   G+S    NG  T + S  P  Q +
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPPFQSQ 463


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 498 PHLLAVSLYNQIFDFHLTHIMSQICIEAKYFLRY 599
           P+  ++S+YNQI D +   I  +      YFLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -3

Query: 107 VLKSF-CFFIY-HFNTSLLFDXQNLKEFPIVK 18
           +L SF C F++ +FN + LFD + +K FP  K
Sbjct: 15  ILLSFSCKFVFGYFNVNQLFDHEFIKVFPNFK 46


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 161 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESP 340
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P   P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 220 TPCRSTKRNEHFQPRTRRRAESDQRHFSSDQRSVYS*GESGATDSAGGPWLQQSA 384
           TP   T   +  QPR RR+A      F+ + +   +   +   D+ G P  +++A
Sbjct: 60  TPRERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHPVDATGAPSNRRNA 114


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 533 LRFSFNSHYVTNMYRG*VF--LE---VRFRLPF*NSA-IVIKDAQNNVCFLLCLL 679
           L+F      +TN Y   ++  LE   ++FR+P  +   I++KD   N CFL  LL
Sbjct: 697 LKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVLNILVKDGTLNFCFLKPLL 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,558
Number of Sequences: 5004
Number of extensions: 59823
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)