Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O11
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 233 PPSATSTFSHGQGDEPKATNGTSVATNGQSTPKESPEPQIQQE 361
           P S  S     +  +P + NG   +    +  K+ P P+ Q+E
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKKGPTPRQQEE 185


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 132 ELVYQAGCSAPPVVVTLTSSTPNRS 206
           E V  AGC+A P    L S  P R+
Sbjct: 400 ETVDPAGCNAGPAKYYLKSRDPERT 424


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 207  GSGSESKMLV*PPPGGRSTLLDRRAPSLRPTL 112
            G GS+   +V    G     LD+R P LR  L
Sbjct: 1612 GHGSDKDDVVYQQTGVGGATLDKRRPDLRDEL 1643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,334
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)