Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O07
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   7.9  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 435 YSNEHLQVWGELHYQVSKSLILHGCCVLTYL 343
           + N HLQ +G +     K+L +HG C   YL
Sbjct: 354 FLNNHLQNYGSVSDDSIKTLKIHGFCPSPYL 384


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = -3

Query: 474 SREKTHAKGLYILYSNEHLQVW--------GELHYQVSKSLILHGCCVLTYLIIHFRF*T 319
           SR   H K  YI      L++W        G+L    + S IL G  +L Y+   F F  
Sbjct: 10  SRTWLHCK--YIQLKETKLEIWYLEKKKSTGDLSTLSAPSFILSGTSLLEYMSYWFEFPE 67

Query: 318 LFLKI 304
           LF+ I
Sbjct: 68  LFVTI 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,572
Number of Sequences: 5004
Number of extensions: 44358
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)