Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O07
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-8|AAP68935.1|  294|Caenorhabditis elegans Aquaporin or aq...    29   5.6  
U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    29   5.6  

>U40415-8|AAP68935.1|  294|Caenorhabditis elegans Aquaporin or
           aquaglyceroporin relatedprotein 8, isoform b protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 450 GLYILYSNEHLQVWGELHYQVSKSLILHG-CCVLT 349
           GL+  +  +H+ VWG L  Q+  + +L G  C++T
Sbjct: 141 GLFTTFPPDHMSVWGSLLDQIIGTAMLSGLVCLIT 175


>U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical
           protein M60.6 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 505 SCTYVTLLM*LYIAKLFHSIFVFIPITFILSSLSV 609
           S +Y   L+  Y+    HSIF+F+P    +SS  +
Sbjct: 98  SASYRRGLVITYLVMCIHSIFIFVPAIITVSSFDI 132


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +3

Query: 432 SIICIILWHEFFLLSA*RLSSIGNFMYLCNITNVVVYC*IIS*YFCIHSNYVHF 593
           ++IC++   + +L      +S+  F+Y C +  ++V   +++   CI  N+V+F
Sbjct: 70  ALICVLQDQKRYLRFHIYFNSVITFIYFCKLIILLVSINMVTSILCIVCNFVNF 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,229
Number of Sequences: 27780
Number of extensions: 242211
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)