Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_O06
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.52
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 1.2
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 28 1.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 27 4.9
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 6.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 6.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.4
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 26 6.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 8.5
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 26 8.5
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 8.5
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 8.5
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 8.5
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.52
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +2
Query: 557 MGN*RRLSKLCHYQTALLGT*RKRRFITQIPCSFL*RNLTMM*ILEKYPTPETYLTLNSA 736
+G+ R +S + + T L+G P F L + I+ KY +TY T +
Sbjct: 1106 LGHVRSMSGIGFFHTCLMGVFLGTTTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTL 1165
Query: 737 VYKAFRTVQQSTPTATFGWPCLE 805
Y +Q PT CLE
Sbjct: 1166 NY-----IQNQQPTKWPNLSCLE 1183
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 691 QYLHHSQISL*KTAWNLCNKTPFPSSPKQGRLIMTQ 584
Q L H +SL + + N+ + P P P+Q +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +1
Query: 67 TSLEAALAVLMC*LHIMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTT 246
T E A + L + I + E G P WDE+++AL F Q K +P T
Sbjct: 496 TRKEEDAASALANLSAVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK-MPLT 554
Query: 247 EKHSKTSLDGRVGFIL 294
+ + T R F L
Sbjct: 555 PRRASTGPRPRPTFQL 570
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 508 NFERNKASLYKLDSAKDGKLEKIIETVSLSNGL 606
N E K + K +G L+ +ET++L NGL
Sbjct: 74 NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 377 LPSSPSHCIKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 264
LPS PS R TP T +++P G M P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 507 TWRIFMTHSSSKQPPTRICFA 445
T+R F T SS+K P +CFA
Sbjct: 21 TFRKFTTESSTKSPIADVCFA 41
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 832 ED*SXARMSLQTRPPKGC 779
+D S ARM+ + PPKGC
Sbjct: 1313 DDSSLARMNREVSPPKGC 1330
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 362 SHCIKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 261
SH N + + P N S VP+TGN+K L V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +1
Query: 469 LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKIIETVSLS 597
L +G E+P PGNF + SLY++ + G+ E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Frame = +3
Query: 738 STRHSG-RYNNRHRRQPLGGRVWRLM--------RAQDQSSKRKNXTKISXPA 869
S +++G R N+R R QP R W L+ RAQD +K+K ++ A
Sbjct: 4 SFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKA 56
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 190 ALYFVSIQDKTIHKYVPTTEKHSKTSLDGRVGFILPVEGTTDQFVV 327
A+ +I+ K + K V + K K SL+ + LP+EGT F V
Sbjct: 295 AINLSAIKSKHLQKIVVLSSK-GKVSLESPMSPSLPIEGTFRSFRV 339
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 473 LLELWVMKILQVTLRETKPPFTNWIQLKMGN*RRLSKLCHYQTALLG 613
LL LW + + L +T+P T + K G R + +C Y A G
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAFGG 149
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 194 YTL*ASKIKLYTNMYQLLKNI 256
Y + A+K K +T YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 266 LVFECFSVVGTYLCIVLSWMLTKYS 192
++F C V+ L ++LSW T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 383 TLLPSSPSHCIKRNLRSTPTTNWSVVPSTGN 291
T+LP + I +ST TTN S P+TG+
Sbjct: 441 TMLPIPGTRRIPTYSQSTSTTNPSATPTTGD 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,876,535
Number of Sequences: 5004
Number of extensions: 87097
Number of successful extensions: 254
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -