Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O04
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.18 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.74 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
 Frame = +3

Query: 753  PXTPXXXRXPP-PXXXXGXPHXPGXXXXXPPRARPA---PXXPXSREXIXLXLPPGXSPX 920
            P  P     PP P      P  P      PP  +PA   P  P   E   +  P    P 
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 921  XXPPRAXPPXAXPA 962
              PP   PP   P+
Sbjct: 1210 VPPPSTAPPVPTPS 1223



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 19/70 (27%), Positives = 23/70 (32%)
 Frame = +3

Query: 753  PXTPXXXRXPPPXXXXGXPHXPGXXXXXPPRARPAPXXPXSREXIXLXLPPGXSPXXXPP 932
            P  P     PP     G P  P      PP  +P+   P       +  P G  P   P 
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP------VPAPSGAPPVPKPS 1127

Query: 933  RAXPPXAXPA 962
             A PP   P+
Sbjct: 1128 VAAPPVPVPS 1137



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 752  PTHAXXXPXPPPPXXGXGPPXPGXGVXXXPPXPAXP 859
            P  A   P  PPP      P P  GV   PP    P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
 Frame = +3

Query: 744  GSXPXTPXXXRXPPPXXXXGXPHXPGXXXXXPPRARPAPXXPXSREXIXLXLPP----GX 911
            G+ P        PP     G P  P      PP   P+   P  +  +     P    G 
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 912  SPXXXPPRAXPPXAXPA 962
             P   P    PP   P+
Sbjct: 1179 PPVPKPAAGVPPVPPPS 1195



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
 Frame = +3

Query: 753  PXTPXXXRXPP-PXXXXGXPHXPGXXXXXPPRARPAPXXPXSREXIXLXLPPGXSPXXXP 929
            P  P     PP P    G P  P      P  +   P  P       +  P G  P   P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAP---PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097

Query: 930  PRAXPPXAXPA 962
              A PP   P+
Sbjct: 1098 SVAAPPVPKPS 1108


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +2

Query: 752 PTHAXXXPXPPPPXXGXGPPXPGXG--VXXXPPXPAXPA 862
           PT A   P  PPP     PP P     +    P PA PA
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
 Frame = +3

Query: 753 PXTPXXXRXPPPXXXXGXPHXPGXXXXXPPRARPAPXXPXSREXIXLXLPPGXSPXXXP- 929
           P TP     PP          P      PP    AP  P S         P  SP   P 
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 930 -PRAXPP 947
            P A PP
Sbjct: 190 LPSAVPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/67 (29%), Positives = 22/67 (32%)
 Frame = +3

Query: 762 PXXXRXPPPXXXXGXPHXPGXXXXXPPRARPAPXXPXSREXIXLXLPPGXSPXXXPPRAX 941
           P   R PPP         P       P  R AP  P          PP  +P   PP A 
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIP-GRSAPALPPLGNASRTSTPPVPTPPSLPPSA- 427

Query: 942 PPXAXPA 962
           PP   P+
Sbjct: 428 PPSLPPS 434


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +2

Query: 752 PTHAXXXPXPPPPXXGXGPPXPGXGVXXXPPXPAXPAGXXLP 877
           P  A   P P P      PP P  G    PP P   AG   P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +2

Query: 752 PTHAXXXPXPPPPXXGXGPPXPGX-GVXXXPPXPAXPA 862
           P  A     PPPP     PP PG  G    PP P  PA
Sbjct: 752 PPPAPIMGGPPPP-----PPPPGVAGAGPPPPPPPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,815
Number of Sequences: 5004
Number of extensions: 16881
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)