Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_O03
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 30 0.38
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 29 1.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 1.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 2.0
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 28 2.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 3.6
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 6.2
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 26 8.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 8.2
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 233 SRGRRHSPGTQHPRTSSASRSPVAPCRRG 147
S RR + QHPRTS +PC+RG
Sbjct: 568 SLSRRSASPLQHPRTSPDMLDKTSPCKRG 596
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 315 LRAMGNWGSRLSQ---VMRPSSFLVRTTTASEFVDKKRLRLGIQGMRLPMWPRALE 473
LR M NWGSRL+ + +P + T A +R + L W + LE
Sbjct: 171 LRQMTNWGSRLALSRFLEKPIRYFTGRTEAEPLTTGQRFVASVSAGALSCWNQPLE 226
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -1
Query: 257 TASSMRTASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STSHKT 78
++SS ++S S + +SS+S S + + SS+ S+VP S S+SH +
Sbjct: 161 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSS 220
Query: 77 HACRSA 60
+ S+
Sbjct: 221 SSSSSS 226
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 654 QSNTCSNTQHDSGQKKLXPEVISDRVRAGAGANG 755
QS T +NTQ + Q P+V+S G+GA+G
Sbjct: 403 QSATFNNTQDVNRQSVSSPKVVSSSSVTGSGASG 436
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 694 KRSSSQKSFLIVLELELAPMGSLSKTRFLHXXLLPKHKVNSY 819
KR + S V++LE P G + R L+ + PKH+ ++
Sbjct: 75 KREADVASLGEVMDLEEVPRGITRQARQLNEYIFPKHRFRNH 116
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -1
Query: 257 TASSMRTASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STSHKT 78
++SS +S S T +SS+S S + SS+KS+ R S +TSH+T
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSS-SRSSSRTTSHRT 181
Query: 77 HACRSARGR 51
+ +S+ R
Sbjct: 182 TSHKSSSYR 190
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 123 IECAARKELEHVTQNTCLPERARPTNQILRNS 28
IE + K LEHVT C+P R +IL S
Sbjct: 488 IEKSNFKRLEHVTVRVCIPFNRRGALEILLES 519
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 330 FPLLEAFSVHIPAGGARVVVAYHADSVFNAYR 235
FP+L+ +H+P G ++VA + YR
Sbjct: 102 FPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 257 TASSMRTASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSN 117
T SS TAS + +PG+ H R ++ AP R A +S +SN
Sbjct: 287 TTSSPSTASLSDKKNPGSVHIRPNNEVAPSSAPSR--APSTTSVESN 331
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 546 KIGSYTTSCYRWPIQSIQSFEFRF 617
K+GS+T C++ PI+ I ++ F
Sbjct: 1069 KMGSFTMLCHKQPIEEILNYASNF 1092
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,016
Number of Sequences: 5004
Number of extensions: 70870
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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