Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_O03
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    83   2e-16
AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical...    35   0.068
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    35   0.089
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    34   0.16 
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    34   0.16 
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    33   0.21 
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    33   0.21 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    31   0.83 
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchang...    29   5.9  

>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
 Frame = +1

Query: 154 RQGATGEREA--EEVLGCCV--PGECLRPREAVRIEDAVRVICNNDTCT-AGRYMHRECF 318
           R   TG+++    EV+GC V  P  C  P++ + + + V++ C  ++C  + R +H  C+
Sbjct: 15  RHSTTGDKDGGVPEVIGCPVLDPIICQCPKDEIELGEGVKMTCTWESCPYSSRPLHHICY 74

Query: 319 EQWETGVLAYLKSCGRARSWSERQRHQNLWTKKGYDLAFKACGCRCGRGHLKKD 480
           +  E  ++  L S G AR W+  QR  NLW +KG  L  K C CRC RG + +D
Sbjct: 75  QLLEDNLVKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRD 128


>AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical
           protein Y54E10A.13 protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -1

Query: 260 RTASSMRTASRGRRH-SPGTQHPRTSSASRSPVAPCRRGAMPR--SSTKSNVPRGKS 99
           R+ SS+ TAS G R+ SP T+   +SS   SP+AP    + P   S + ++V  GK+
Sbjct: 106 RSNSSVPTASGGARNGSPSTRSSTSSSIQGSPIAPTTSASQPTRPSDSTADVSDGKN 162


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 26/71 (36%), Positives = 37/71 (52%)
 Frame = -1

Query: 263 TRTASSMRTASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STSH 84
           +R++   R+ SR R  S    + R+ S SR      RR +  RSS K+   RG+  ST+ 
Sbjct: 120 SRSSKRSRSRSRSRSRSRSRSYSRSRSGSRRS---SRRRSRRRSSLKA---RGRRASTAK 173

Query: 83  KTHACRSARGR 51
           KT A R +R R
Sbjct: 174 KTPAKRRSRSR 184


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = -1

Query: 260 RTASSMRTASRGRRHSPGTQH-PRTSSASRSPVA-PCRRGAMPRSSTKSNVPRGKS*STS 87
           R+ SS R+ SR R   P T+   R+SS SRS      RR +  RSS+K+   RG+  ST+
Sbjct: 125 RSRSSKRSRSRSR---PRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKA---RGRRASTA 178

Query: 86  HKTHACRSARGR 51
            KT A R +R R
Sbjct: 179 KKTPAKRRSRSR 190


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = -1

Query: 260 RTASSMRTASRGRRHSPGTQH-PRTSSASRSPVA-PCRRGAMPRSSTKSNVPRGKS*STS 87
           R+ SS R+ SR R   P T+   R+SS SRS      RR +  RSS+K+   RG+  ST+
Sbjct: 125 RSRSSKRSRSRSR---PRTRSGSRSSSRSRSGSRRSSRRRSRRRSSSKA---RGRRASTA 178

Query: 86  HKTHACRSARGR 51
            KT A R +R R
Sbjct: 179 KKTPAKRRSRSR 190


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -1

Query: 236 ASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STSHKT 78
           A R    SP   H R+ S SRSP +P RR     +S++S+    +S S+S K+
Sbjct: 516 ARRSNSRSPPRDHKRSRSPSRSP-SPRRRQRSSSNSSRSSGSSSRSSSSSRKS 567


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -1

Query: 236 ASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STSHKT 78
           A R    SP   H R+ S SRSP +P RR     +S++S+    +S S+S K+
Sbjct: 516 ARRSNSRSPPRDHKRSRSPSRSP-SPRRRQRSSSNSSRSSGSSSRSSSSSRKS 567


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = -1

Query: 239 TASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STS 87
           TA +  R   G   P+TSS   +P AP  R AMP +S+ S   R  S S+S
Sbjct: 343 TAQQAPRKPIGIARPQTSSGIAAPGAPRSRIAMPTTSSSSLARRPGSASSS 393


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -1

Query: 233 SRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGK 102
           ++ R  SP  +  R+ SAS+SP AP RR    RS +KS  P  K
Sbjct: 364 AKSRSKSPPARRRRSPSASKSPPAPRRR----RSPSKSRSPAPK 403



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 257 TASSMRTASRGRRHSPGTQHP---RTSSASRSPVAPCRRGAMPRSSTKSNVPRGKS*STS 87
           +AS     +R RR    ++ P   R  S S+SP AP RR   P S++KS  P  K   + 
Sbjct: 309 SASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSP-SASKSPPPAPKRAKSR 367

Query: 86  HKTHACRSAR 57
            K+   R  R
Sbjct: 368 SKSPPARRRR 377


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 188 SSASRSPVAPCRRGAMPRSSTKSNVPRGKS 99
           S +S+S + P R   +PR+S+KS +P GK+
Sbjct: 595 SQSSQSQLQPVRPQPLPRTSSKSTIPYGKT 624


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 270 QQRHVHRRPVYAQRMLRAMGNWGSRLSQVMRPSSFLVRTTTASEFVD 410
           Q++ V RR  Y Q +   +  +  +LS + +P S LVR  T+S F D
Sbjct: 67  QKQVVERRDPYTQEIFDRV--FSGKLSNIPKPQSKLVRVFTSSTFTD 111


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = -1

Query: 260 RTASSMRTASRGRRHSPGTQHPRTSSASRSPVAPCRRGAMPRSSTKSNVPRGK 102
           R+ S+ R+ SR R +S G    R+ SAS+SPV   R     R S++S  PR +
Sbjct: 4   RSRSNSRSQSRSRENSRG----RSRSASKSPVYHRRE----RESSRSRSPRAR 48


>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 528 LFLLCSDCCSRR*PIKIFFQVPSATSAAACLECQVVTFF 412
           ++  C+   SRR P   FFQ P +T       CQ + FF
Sbjct: 1   MYQCCAALNSRREPRADFFQEPHSTDMYTYFPCQEICFF 39


>AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchangers
           protein 10 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 202 CVPGECLRPREAVRIEDAVRVICNNDTCTAGRYM 303
           C   ECL  +   R +    + CN D C  G Y+
Sbjct: 52  CSQDECLIQKHWTREDTCAYIKCNKDACEGGGYL 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,782,757
Number of Sequences: 27780
Number of extensions: 438389
Number of successful extensions: 1445
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)