Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_O01
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 241 7e-65
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 42 1e-04
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 35 0.017
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.64
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 2.6
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 3.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 7.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 7.9
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 241 bits (591), Expect = 7e-65
Identities = 118/157 (75%), Positives = 128/157 (81%)
Frame = +3
Query: 243 LDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLG 422
LD+++LS + P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLG
Sbjct: 5 LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLG 64
Query: 423 YANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTGRFQLVRHVSFVXCPXHDILM 602
YANAKIY+C N +CPRP + S S+K+D PC C LVRHVSFV CP HDILM
Sbjct: 65 YANAKIYKCSNEECPRPGCYRSYSSNKEDHPPC--EICNSPMNLVRHVSFVDCPGHDILM 122
Query: 603 ATMLNGAAVMDAXLLLIAGXESCPQPQTXEHLXAIXI 713
ATMLNGAAVMDA LLLIAG ESCPQPQT EHL AI I
Sbjct: 123 ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEI 159
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 558 RHVSFVXCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXEHL 698
RH + V CP H + M+ GAA MD +++++ + PQT EHL
Sbjct: 116 RHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDG-QMPQTREHL 161
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 282 ISRQATINIGTIGHVAHGKSTVVKAIS 362
+ ++ +NIGTIGHV HGK+T+ AI+
Sbjct: 48 VRKKPHVNIGTIGHVDHGKTTLTAAIT 74
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 34.7 bits (76), Expect = 0.017
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 207 TQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGT-IGHVAHGKSTVVKAISGVQTVRF 383
T +++H Q L++ ++ K SA++ S ++ I A+GK+ ++ A Q + +
Sbjct: 825 TMTDVHDQKLAERELQKQSAIAANENSYRSLAEASPQIVFAANGKNGIIYA--NAQWLSY 882
Query: 384 KNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 512
L ++ LG+ +A +Y D KC P S +++D+S
Sbjct: 883 SG-LSLESSLGLGFLSA-VYHADRKKCLLPESLEGTFNNQDES 923
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 558 RHVSFVXCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXEHLXAI 707
+ ++F+ P H A GA + D +L++AG + +PQT E + I
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGV-KPQTVEAIKHI 268
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 318 GHVAHGKSTVVKAISGVQT 374
GH++HG ST KAIS V T
Sbjct: 139 GHLSHGFSTPQKAISAVST 157
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 474 TSFISGGSSKDDSFPCLRPACTGRFQ 551
+ FI G + DD CL P C GR +
Sbjct: 18 SGFIKAGFAGDDIPKCLFPTCVGRIK 43
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 360 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPA 533
S QT + L + + +++A + P+PT F SGG SK F PA
Sbjct: 207 SNTQTANTTSNLR--VPVNASWSDAGRKEKSQENKPKPTPFGSGGPSKPTPFESHGPA 262
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 97 FTAVNENYYRIFFLKHFANSNKIGLTQPLWLRTKGELLNQTCISKTYLNWMSQ 255
F+ + RI FL +S K+G+T W+ + + IS NW ++
Sbjct: 1041 FSVLARKIVRIPFLDFSPSSFKLGITLWNWMMNQVPSFSSFLISNIIRNWKNE 1093
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 327 AHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKD 506
A G V+ S Q F +E+ T+KL Y N + + P PR T S D
Sbjct: 396 ARGWCNVLDDESSQQNQNFSSEIGIFQTVKLWYLNESKFDTNPP--PRSTMSCRKLSGID 453
Query: 507 DSF 515
D F
Sbjct: 454 DPF 456
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 267 LSPEVISRQATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKL 419
L P ++S++ T+N ++ H VVK + GV V++ L + +TI++
Sbjct: 2568 LYPSILSQEDTMNDNSLLPTFHSMVAVVKNDTYGVTYVKYATILLQELTIEI 2619
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,148
Number of Sequences: 5004
Number of extensions: 53093
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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