Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_O01
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 256 2e-68
02_04_0462 + 23131433-23132836 47 2e-05
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 44 1e-04
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 32 0.68
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 30 2.1
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 30 2.7
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 256 bits (626), Expect = 2e-68
Identities = 127/166 (76%), Positives = 138/166 (83%), Gaps = 1/166 (0%)
Frame = +3
Query: 219 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 398
L +QDLSKLDVTKL LSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE
Sbjct: 34 LMKQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 93
Query: 399 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTG-RFQLVRHVSFV 575
RNITIKLGYANAKIY+C++ KCPRP + + GS K+DS C P R +L+RHVSFV
Sbjct: 94 RNITIKLGYANAKIYKCEDEKCPRPMCYKAYGSGKEDSPHCDVPGFENTRMKLLRHVSFV 153
Query: 576 XCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXEHLXAIXI 713
CP HDILMATMLNGAA+MD LLLIA ESCPQPQT EHL A+ I
Sbjct: 154 DCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI 199
>02_04_0462 + 23131433-23132836
Length = 467
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3
Query: 558 RHVSFVXCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXEHL 698
RH + V CP H + M+ GAA MD +L+++G + P PQT EH+
Sbjct: 133 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHI 178
Score = 35.1 bits (77), Expect = 0.073
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 300 INIGTIGHVAHGKSTVVKAISGV 368
+NIGTIGHV HGK+T+ A++ V
Sbjct: 71 VNIGTIGHVDHGKTTLTAALTMV 93
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 558 RHVSFVXCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXEHL 698
RH + V CP H + M+ GAA MD +L+++ + P PQT EH+
Sbjct: 130 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHI 175
Score = 35.9 bits (79), Expect = 0.042
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 300 INIGTIGHVAHGKSTVVKAISGV 368
+N+GTIGHV HGK+T+ AI+ V
Sbjct: 68 VNVGTIGHVDHGKTTLTAAITKV 90
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 31.9 bits (69), Expect = 0.68
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 282 ISRQATINIGTIGHVAHGKSTVVKAI-SGVQTVRFKNELERNITIKLGYANAKIYQCDNP 458
+ + +T+ + GH GK VVK + G+ + ++E E + G+ A+ C+N
Sbjct: 536 VPKSSTVTVLRTGHDGEGKQGVVKHLYMGILFIHNESESENS-----GFFCAQCSSCENV 590
Query: 459 KCPRPTSFISGGSSKDDSFP 518
K + + + G+S D+ P
Sbjct: 591 KKRKELASFTFGNSDDNPIP 610
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Frame = +3
Query: 303 NIGTIGHVAHGKSTVV-KAISGVQTVRFKN-----------ELERNITIKLGYANAKIYQ 446
N I H+ HGKST+ K + TV+ + E ER ITIKL A +
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQQFLDNMDLERERGITIKLQAARMRYIM 138
Query: 447 CDNPKC 464
D P C
Sbjct: 139 NDEPYC 144
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 564 VSFVXCPXHDILMATMLNGAAVMDAXLLLIAGXESCPQPQTXE 692
++F+ P H A GAAV D +L++A + PQT E
Sbjct: 247 ITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGV-MPQTLE 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,920
Number of Sequences: 37544
Number of extensions: 332121
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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