Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N24
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.56
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.0
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 648 PPXXXGGRXKXPPPXGEXXKPPPPPP 571
P GG PPP G PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = -3
Query: 649 PPXLXGGKKXXXPPXG---GGXXTPXPPPPXXXGXGGXFF 539
P + GG PP G G P PPPP G ++
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 804 GGXXPPPXXKKKXXXSPPXKPPPXP 878
GG PPP PP PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Frame = -1
Query: 648 PPXXXGGRXKXPPP----XGEXXKPPPPPP 571
PP G PPP G PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +3
Query: 465 KKPPPPPXXXXXXXXXXXXXXXXQXKKXPPXPXXXGGGGXGVXXPPPXGGXXXFFPPXR 641
K+PPPPP PP P G PP G PP R
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +3
Query: 807 GXXPPPXXKKKXXXSPPXKPPPXPPXXPP 893
G PPP + +PP PP P P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 851 PPXKTPPXXPXXXPPXXKXKTLXXXXXXGEGAPXXPP 961
PP TPP P PP AP PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 819 PPXXKKKXXXSPPXKPPPXPPXXPP 893
PP K P PPP PP PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 893 GGXXGGXRGGFXGGGXXXF 837
GG GG RGGF GG F
Sbjct: 172 GGSRGGSRGGFRGGSRGGF 190
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 893 GGXXGGXRGGFXGG 852
GG GG RGGF GG
Sbjct: 160 GGFGGGSRGGFGGG 173
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 630 GRXKXPPPXGEXXKPPPPPP 571
G P P + +PPPPPP
Sbjct: 342 GNQVMPTPQVQGSRPPPPPP 361
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 819 PPXXKKKXXXSPPXKPPPXPPXXPPXXXXKK 911
PP P +PP PP PP KK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Frame = -1
Query: 633 GGRXKXPPPXG--EXXKPPPPPP 571
G PPP G +PPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Frame = +3
Query: 816 PPPXXKKKXXXSPPXKP------PPXPPXXPP 893
PPP SPP P PP PP PP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,956
Number of Sequences: 5004
Number of extensions: 19924
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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