Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N23
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   166   3e-42
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   166   3e-42
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    79   8e-16
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    79   8e-16
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    79   8e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    49   1e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    36   0.010

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  166 bits (404), Expect = 3e-42
 Identities = 76/85 (89%), Positives = 78/85 (91%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRK 372
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRK
Sbjct: 39  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRK 98

Query: 373 CYARLHPRATNCRKTKCGHTNNLRP 447
           CYARL PRATNCRK KCGHTN LRP
Sbjct: 99  CYARLPPRATNCRKKKCGHTNQLRP 123



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  166 bits (404), Expect = 3e-42
 Identities = 76/85 (89%), Positives = 78/85 (91%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRK 372
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRK
Sbjct: 39  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRK 98

Query: 373 CYARLHPRATNCRKTKCGHTNNLRP 447
           CYARL PRATNCRK KCGHTN LRP
Sbjct: 99  CYARLPPRATNCRKKKCGHTNQLRP 123



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 39  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 39  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 115 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 191 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 267 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 343 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 115



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 191



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 267



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 343


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 306
           +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 39  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPE 194
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPP+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 39


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +1

Query: 193 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 309
           +QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct: 39  SQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 29/38 (76%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPP 191
           M I VKTLTGK I L+++ +D +  +K ++++KEGIPP
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPP 38


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 190 QNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 297
           + +QRLI+AG+ L+D  +L  Y IQ   ++HLV  L
Sbjct: 41  KERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,681
Number of Sequences: 5004
Number of extensions: 50085
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)