Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N23
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    30   0.032
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.53 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.70 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.92 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 385 DGHSIYGKSFSHSYTSWRECEGKVQLYLL*VSKPGEVWIL 266
           DG+ +     + SY   + C+G   +Y + V K G +WIL
Sbjct: 98  DGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWIL 137


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 349 SYTSWRECEGKVQLYLL*VSKPGEVWIL 266
           S+ ++++C G V  Y + + K   +WIL
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWIL 142


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 349 SYTSWRECEGKVQLYLL*VSKPGEVWIL 266
           S+ ++++C G V  Y + + K   +W+L
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWVL 142


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -3

Query: 471 YLIXDLLFGSQIVSV----SALC--LATVGSTRMKTGIAFTANHFLTVILHGENAKGRFN 310
           +L+   LFG Q +++    +AL   +   G   + +G   +  ++ T+I   +   G  N
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66

Query: 309 CTSSKSQNQV 280
           C SSK +  +
Sbjct: 67  CDSSKFEEDL 76


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 349 SYTSWRECEGKVQLYLL*VSKPGEVWIL 266
           S+  + +C G V  + + V K   +W+L
Sbjct: 117 SFAKYEDCSGIVSAFKIAVDKFDRLWVL 144


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 277 VWILSGCYSLKECGHLLIVSRQR*DVVGSGGIPSL 173
           +WI S   SL+   ++ IVS    D++ +  +P L
Sbjct: 79  IWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPML 113


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 277 VWILSGCYSLKECGHLLIVSRQR*DVVGSGGIPSL 173
           +WI S   SL+   ++ IVS    D++ +  +P L
Sbjct: 79  IWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPML 113


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 337 WRECEGKVQLYLL 299
           W++CEGK+  YL+
Sbjct: 200 WKQCEGKID-YLV 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,412
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)