Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    83   5e-17
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    31   0.17 
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   4.8  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   8.5  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   8.5  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
 Frame = +2

Query: 476 DLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNC 652
           D+R  I   I ++  EL+ + + I  Q+ +H+ ++E++LT G S  VE FLR   + R  
Sbjct: 168 DMRAVIISGIQDVIDELDKINTDIEVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKF 227

Query: 653 KVVVAEGTDVGE--SHAMARRLSNSGVSVTVINSSCVFAVMSRVNK 784
            V+VAEG    +  SHAMA+RL+ +G+  TVI+ + +FA+MSRVNK
Sbjct: 228 SVIVAEGFPNNQKGSHAMAKRLAQAGIDTTVISDATIFAIMSRVNK 273



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 178 GSEQIAEATLTLVEKIISESN-ATARELCGVLRAAARRISSSLPLELVAINMIRRVLRAI 354
           G   +A  T  ++ ++IS++  +T  +L   +RA    +  + P E    N+IRR+LR I
Sbjct: 27  GPFAVAVETALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKAQPTEFSCGNIIRRILRLI 86

Query: 355 RX*KQSFRRPVPEW*GCRRESPRSGSGDSGPAQHR 459
           R   Q   +   E      +   S S  S P+Q R
Sbjct: 87  REEYQELLKTADE----NEKLIVSSSNSSSPSQKR 117


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +2

Query: 398 EGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTELETMRSSITSQAREHVRA 577
           E VG S Q   L+  ++ S     ++  R  + D IAELR  + T+RS   S   + ++ 
Sbjct: 411 EPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKG 470

Query: 578 DEVLLT--FGASALVER---FLRPTQNRNCKVV 661
             V L+     + ++ +   +++  Q++N K++
Sbjct: 471 TYVPLSRKLNKATILSKATEYIKSLQSKNKKLI 503


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 585 CYSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTP 698
           C+     ++WS GS     + T +SSS KG+T   V P
Sbjct: 95  CHDNGQISMWSKGS--WLLVHTLKSSSHKGITGIAVHP 130


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 485  PSSPDPLKARCCAGPESPEPDLGDSLLHPHHSGTGLRK 372
            PS+P P      + P  P P    +LL   H+GT L+K
Sbjct: 1728 PSAPPP-PLPASSAPSVPNPGDRSALLQQIHTGTRLKK 1764


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +3

Query: 90  LESLDIELSEKHIETVGKFVADIRNN-KLSWLRADSGGDANTSGEDYQRV*CNSTGTLWS 266
           ++S+   + +  +E V  +  D  NN    W+  D        G +   V  +S GT W+
Sbjct: 508 VKSVSYIIEKMEVEGVDSWFNDTENNGHAQWVHPDYRNKEYIRGTETLDVWFDS-GTSWT 566

Query: 267 PTCGRSSYQLKFTTGAGSDQH 329
               R +  L      GSDQH
Sbjct: 567 TIAPRKNKPLIDLCLEGSDQH 587


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 454 HRAFNGSGLEGTYKRSHRRAPNRAGDNEVVHNESGP 561
           + +F+GSGL G +   HR   +  G +   H +S P
Sbjct: 134 YNSFHGSGLGGLFPNIHRELESH-GFSLPTHEQSSP 168


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 661 DDLAVPILGRPQEPLDQSAGPERE*HLVRPHVLAGLTR 548
           DD+ V + G   EP+++   P    HL++   L+G T+
Sbjct: 154 DDIPVEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQ 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,160
Number of Sequences: 5004
Number of extensions: 57280
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)