Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N18
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 75 6e-14
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 43 3e-04
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 42 9e-04
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 31 1.7
01_05_0242 + 19828521-19829252 31 1.7
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 29 3.8
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 29 3.8
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 29 5.1
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 5.1
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 75.4 bits (177), Expect = 6e-14
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +2
Query: 464 STDQDLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQN 643
S + L+ + I +L E++T I+ QA EH+ +EV+LT G S V+ FL +
Sbjct: 169 SKSRKLKHDVIAAIGDLIDEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKE 228
Query: 644 --RNCKVVVAEGTDVGESHAMARRLSNSGVSVTVINSSCVFAVMSRVN 781
R+ +V VAEG + H +A+ L GV TVI S VFA++SRVN
Sbjct: 229 KKRSFRVFVAEGAPRYKGHVLAKELVEKGVQTTVITDSAVFAMISRVN 276
Score = 35.5 bits (78), Expect = 0.059
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +1
Query: 178 GSEQIAEATLTLVEKIISE----SNATARELCGVLRAAARRISSSLPLELVAINMIRRVL 345
GS +A T L+ ++S+ S A L +R ++ ++ P+EL N++RRVL
Sbjct: 22 GSHAVARQTAELLRSVVSQHRMGSTNQAAALADAVRGVGEQLIAANPIELAVGNIVRRVL 81
Query: 346 RAIRX*KQSFRRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAPN 519
I+ ++ G + DSG H + + L + R+ RAP+
Sbjct: 82 HIIK--EEDISSTAVGIEGLSVTAESDDEYDSGNDDHPTLSAAVL-AAHARNALRAPS 136
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 545 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGESHAMARRLSN 718
I S A VR ++VLLT+G+S++VE L R +V+V + E + RRL
Sbjct: 403 IVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVE 462
Query: 719 SGVSVTVINSSCVFAVMSRVNK 784
G++ T + + + +M V +
Sbjct: 463 KGINCTYTHINAISYIMHEVTR 484
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 41.5 bits (93), Expect = 9e-04
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 545 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGESHAMARRLSN 718
I S A VR D+VLLT+ +S++VE + +VVV + E A+ RL
Sbjct: 398 IVSHAIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVA 457
Query: 719 SGVSVTVINSSCVFAVMSRVNK 784
G+S T + + + +M V +
Sbjct: 458 KGISCTYTHINAISYIMHEVTR 479
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 429 TRPWRLSPTPSPLWNWSTEALFSXP-DGS*NSPNH 328
T W PTP+ W++ +L S DGS NSP+H
Sbjct: 45 TLTWGSKPTPTTPNAWNSSSLLSPKNDGSSNSPSH 79
>01_05_0242 + 19828521-19829252
Length = 243
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 403 CRRESPRSGSGDSGPAQHRAFNGSG 477
CRR+ R G+GD PA+ RA G G
Sbjct: 72 CRRDRGRGGAGDGVPAKLRAGRGGG 96
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 543 P*RVRPASTCGRTRCYSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTPWRGG 710
P R+RPA ++C R P+ G+ G PR + R+ TPWRGG
Sbjct: 11 PLRLRPACRVA-SQCGGR--PSTRRRGAGGGPRRAVPQPPVRRPSGDRACTPWRGG 63
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 169 NYLGSEQIAEATLTLVEKIISESNATAREL 258
+Y+ S I E++L EKIISE NA R +
Sbjct: 277 DYVDSSDILESSLNAKEKIISELNAELRSI 306
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 78 IMAPLESLDIELSEKHIETVGKFVADIRNNKLSWL 182
+M L SLD+ +S K++E + F +R L W+
Sbjct: 340 VMDELASLDMTVSSKNLEDLSNFFKVLRQQALRWV 374
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 503 IAELRTELETMRSSITSQAREHVRADEVL 589
IAEL EL+T R+ + ++A H + E+L
Sbjct: 409 IAELNNELDTNRTMLDNEAEAHKKLSEIL 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,522,047
Number of Sequences: 37544
Number of extensions: 474591
Number of successful extensions: 1656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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