Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N18
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 32 0.65
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 31 0.86
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 31 0.86
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 31 0.86
U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 30 2.6
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical pr... 28 8.0
U64855-6|ABN43077.1| 54|Caenorhabditis elegans Hypothetical pr... 28 8.0
AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen stru... 28 8.0
AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : short... 28 8.0
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.65
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 449 HSIVPSTDQDLREPIRDHIAELRTELETMRSSITS 553
H ++ +DLRE +R+H+ EL + ET+ +++ S
Sbjct: 198 HVLIEKEVEDLREKVREHLGELSKQSETIGNALHS 232
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 503 IAELRTELETMRSSITSQAREHVRADEV 586
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 503 IAELRTELETMRSSITSQAREHVRADEV 586
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 503 IAELRTELETMRSSITSQAREHVRADEV 586
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical
protein C37A2.3 protein.
Length = 442
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 587 LLTFGASALVERFLRP--TQNRNCKVVVAE---GTDVGESHAMARR 709
L FG+ AL ERFLRP T + + V+E G+DV H ARR
Sbjct: 154 LAQFGSDALRERFLRPSITGDLVSSLAVSEPHAGSDVSAVHTHARR 199
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 409 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 516
R +PR G GP +R G G G+Y R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 409 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 516
R +PR G GP +R G G G+Y R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 409 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 516
R +PR G GP +R G G G+Y R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 409 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 516
R +PR G GP +R G G G+Y R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 90 LESLDIELSEKHIETVGKFVADIRNNKLSWLRADSGGDANTSGED 224
+ S+D+E +K + ++ KFV+ RN +DSGG+ T E+
Sbjct: 95 MPSIDVEALQKLLLSIPKFVSASRNRINQRHDSDSGGEMTTEIEE 139
>Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical
protein F08H9.7 protein.
Length = 386
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 138 GKFVADIRNNKLSWLRADSGGDANTSGEDYQRV*CNSTGTLWSPTCGRSSYQLKFTTGAG 317
G V I + +LSWL + +++ + + N+T W T G S Y +TTG
Sbjct: 60 GTQVFIISSTELSWL---TDFTSSSLAQPWVATTRNTTNNKWYNTDGSSPYSFFWTTGEP 116
Query: 318 SDQHD*ESFK 347
S D +FK
Sbjct: 117 SLNGDCATFK 126
>U64855-6|ABN43077.1| 54|Caenorhabditis elegans Hypothetical
protein ZK742.6 protein.
Length = 54
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 843 PASPKDPRRPP 811
PA PKDPRRPP
Sbjct: 7 PADPKDPRRPP 17
>AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen
structural gene, probablya critical component of the
embryonically derived outerlayer of the L1 cuticle (31.8
kD) (col-59) protein.
Length = 322
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 412 ESPRSGSGDSGPAQHRAFNG-SGLEGTY-KRSHRRAPNRAGDNEVVHNESGPXXXXXXXX 585
+ PR G SG R G SG GT + + P + GD+ V N +GP
Sbjct: 196 QGPRGSPGLSGVDGRRGEPGMSGPAGTQGEPGPQGPPGKKGDDGRVINVNGPPGAGGAPG 255
Query: 586 XTHVRGQRSGRAVP 627
+G+R + VP
Sbjct: 256 PQGRKGERGPKGVP 269
>AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 14 protein.
Length = 322
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 412 ESPRSGSGDSGPAQHRAFNG-SGLEGTY-KRSHRRAPNRAGDNEVVHNESGPXXXXXXXX 585
+ PR G SG R G SG GT + + P + GD+ V N +GP
Sbjct: 196 QGPRGSPGLSGVDGRRGEPGMSGPAGTQGEPGPQGPPGKKGDDGRVINVNGPPGAGGAPG 255
Query: 586 XTHVRGQRSGRAVP 627
+G+R + VP
Sbjct: 256 PQGRKGERGPKGVP 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,445
Number of Sequences: 27780
Number of extensions: 346820
Number of successful extensions: 1013
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -