Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N17
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    32   0.62 
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    30   2.5  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    30   2.5  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    29   4.4  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    29   4.4  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    29   4.4  
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      29   5.8  

>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
 Frame = +2

Query: 77  IYLGILEGEDTVDEKRDALEDILSEIVK-------KDISIHVQEILEKWEECQPKKEAAQ 235
           IY+   +G++  DEK+D  ++   E  K       KD     ++  +K E+ + KKE  +
Sbjct: 127 IYISFKKGDEKGDEKKDEKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEEKK 186

Query: 236 PATDVDSKLAKLLESQTLATTTRREYTDEEKKIREA 343
                + K  K  E++      +++   EEKK+ EA
Sbjct: 187 EEKKEEKKEEKNDENKEEKKEEKKDEKKEEKKVEEA 222


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 182  QEILEKWEECQPKKEAAQ-PATDVDSKLAKLLESQTLATTTRREYTDEEKKIREAILSQY 358
            Q+ L++ +  Q ++  +  P  + + + + L++  T  TT  RE+ DE + + +   SQ+
Sbjct: 3682 QDELQREDHTQSEERRSSIPTEETEHEDSHLIKETTTTTTVTREFYDEPENVEKLQDSQF 3741

Query: 359  S 361
            S
Sbjct: 3742 S 3742


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 182  QEILEKWEECQPKKEAAQ-PATDVDSKLAKLLESQTLATTTRREYTDEEKKIREAILSQY 358
            Q+ L++ +  Q ++  +  P  + + + + L++  T  TT  RE+ DE + + +   SQ+
Sbjct: 3682 QDELQREDHTQSEERRSSIPTEETEHEDSHLIKETTTTTTVTREFYDEPENVEKLQDSQF 3741

Query: 359  S 361
            S
Sbjct: 3742 S 3742


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 159 KKTSRYTYKKYLRSGRNVNRKKRLHNLQQMSIANLPNFSNP--RHWPLQLDENTQTRKR- 329
           KK   + +    RSGR+   K      QQ  I   P+ SN   RHW  ++ E+ QT+K  
Sbjct: 412 KKAQDWQHSLNFRSGRSAINK------QQNEIKIKPSSSNDQKRHWLFKMRESAQTKKNL 465

Query: 330 KY 335
           KY
Sbjct: 466 KY 467


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 95  EGEDTVDEKRDALEDILSEIVKKDISIHVQEILE---KWEECQPKKEAAQPATDVDSKLA 265
           +G+   D+K+D  +D   +  KKD      E  +   K E+   KK+  +      SK +
Sbjct: 98  DGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDKKDEKKDEKKDEKKDEKKEKSKKS 157

Query: 266 KLLESQTLATTTRREYTDEEKK 331
           K       +  ++RE  DEEKK
Sbjct: 158 KKSSKSKKSKKSKREKKDEEKK 179


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 95  EGEDTVDEKRDALEDILSEIVKKDISIHVQEILEKWEECQPKKEAAQPATDVDSKLAKLL 274
           +G+   D+K+D  +D   +  KKD      E  +K ++   KK+  +      SK +K  
Sbjct: 98  DGDKKEDDKKDEKKDEDKKDEKKDADEKKDE-EKKDDKKDEKKDEKKDEKKEKSKKSKKS 156

Query: 275 ESQTLATTTRREYTDEEKK 331
                +  ++RE  DE+KK
Sbjct: 157 SKSKKSKKSKREKKDEDKK 175


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 182 QEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTL-ATTTRREYTDEEKKIREAILSQY 358
           +E  E+ EE  P     Q AT+          + T+ +TTT  E TDE++ + E +    
Sbjct: 550 EETTEETEETFPTPSTMQVATNGQFTTETAFVTSTIPSTTTDMEETDEDEDMTEEVTDSS 609

Query: 359 SQLS 370
           +Q S
Sbjct: 610 TQPS 613


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 182 QEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTL-ATTTRREYTDEEKKIREAILSQY 358
           +E  E+ EE  P     Q AT+          + T+ +TTT  E TDE++ + E +    
Sbjct: 550 EETTEETEETFPTPSTMQVATNGQFTTETAFVTSTIPSTTTDMEETDEDEDMTEEVTDSS 609

Query: 359 SQLS 370
           +Q S
Sbjct: 610 TQPS 613


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 182 QEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTL-ATTTRREYTDEEKKIREAILSQY 358
           +E  E+ EE  P     Q AT+          + T+ +TTT  E TDE++ + E +    
Sbjct: 550 EETTEETEETFPTPSTMQVATNGQFTTETAFVTSTIPSTTTDMEETDEDEDMTEEVTDSS 609

Query: 359 SQLS 370
           +Q S
Sbjct: 610 TQPS 613


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 182 QEILEKWEECQPKKEAAQPATDVDSKLAKLLESQTL-ATTTRREYTDEEKKIREAILSQY 358
           +E  E+ EE  P     Q AT+          + T+ +TTT  E TDE++ + E +    
Sbjct: 550 EETTEETEETFPTPSTMQVATNGQFTTETAFVTSTIPSTTTDMEETDEDEDMTEEVTDSS 609

Query: 359 SQLS 370
           +Q S
Sbjct: 610 TQPS 613


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 256 AIDICCRLCSLFFRLTFLPLLKYFLYVYRDVFF 158
           A  + C +CSLF  +TFL  L  F Y  R + +
Sbjct: 233 AWSVACFVCSLFTLVTFLVDLSRFAYPVRPILY 265


>Z49132-8|CAA88987.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK666.8 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 286 TGHYNSTRIHRRGKENTRSDLVSVQSTL 369
           T  Y STR+HRR ++    D+VS+  TL
Sbjct: 239 TQRYVSTRVHRRLEQTPTDDMVSLLYTL 266


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 256 AIDICCRLCSLFFRLTFLPLLKYFLYVYRDVFF 158
           A  + C +CSLF  +TFL  L  F Y  R + +
Sbjct: 233 AWSVACFVCSLFTLVTFLVDLSRFAYPVRPILY 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,527
Number of Sequences: 27780
Number of extensions: 278563
Number of successful extensions: 1169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)