Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    46   7e-06
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    30   0.49 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    30   0.49 
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    27   2.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   3.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   3.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.6  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   4.6  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   6.0  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +3

Query: 315 EITLERESEDEIPPTPSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCS 494
           ++ +  E++   P  P   I +++ G    K++ K    T  DEEGF++TK+EE++ES S
Sbjct: 268 QLEIGTEAKSAAPDEPQEIIKSVSGGKRRGKRKVKKYATT-KDEEGFLVTKEEEVWESFS 326

Query: 495 DDE-VHT-KENVDIKKQVTVETTALK 566
           +DE + T   NV   K  TV     K
Sbjct: 327 EDENISTGTSNVVRNKPTTVNIATKK 352


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 306 LADEITLERESEDEIPPTPSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLT 464
           L +E TLE  S+  +PPT    I +    L+ +++   I+ K  TD   FM T
Sbjct: 293 LINESTLESPSDPPLPPTKMKDI-DYFVSLLESEQNSLILGKNATDPSVFMYT 344


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 429 KTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIKKQVTVETTALK 566
           K  +DEE     KK++  E   + +   ++NV  KKQVTV+    K
Sbjct: 276 KRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKK 321


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +3

Query: 327 ERESEDEIPPTPSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEV 506
           +++S+  IPPT      +      NAKKR+   +K     +  +  +K+ ++E+ SD E 
Sbjct: 4   KQKSKQGIPPTLEENHNSSHKVTENAKKRKHSKEKPQNSRKRQLAEEKKSLFEN-SDSE- 61

Query: 507 HTKENVDIKKQVTVET 554
           + K+ +D  +    ET
Sbjct: 62  NEKDLIDADEFEEAET 77


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 59  NIDDSSKTNGTEIKLTEKKSVHSIIAQKNEAST 157
           N+D S +TN TE ++ +K  V  + A + ++++
Sbjct: 727 NVDTSKQTNATEPEVVDKTKVEKLKASEGKSTS 759


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 687 WNKIIIPSRYSGCQFNCFNKDPILY 761
           WN   +P  YS C    F+ DP +Y
Sbjct: 281 WNMAGVPFTYSHCTLYLFSHDPSVY 305


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 669 MVFNLVLF*RSSSWLVVYVFVMEKTFFLIALLAHFSEQWFQ 547
           +V  L +     +W+ ++V ++ +  F I  LA+F   W Q
Sbjct: 198 LVLLLQILGPKKTWMHIFVIIIVQILFSIPFLAYFWSYWTQ 238


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 360  PSATI-VNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIKK 536
            P  T+ + I     N +K +++I +    +   M+T  + +YES     +  K   D+K 
Sbjct: 1080 PEETVTITIVGSPENCEKAKEMIQEKVASQYTQMITVPDTVYESIMKGILMKKLRSDLK- 1138

Query: 537  QVTVETTALKNV 572
             V V+T  +K V
Sbjct: 1139 -VFVDTPEIKPV 1149


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 303 NLIFHNHYHYQKHAILFCVSFQKNSPWL 220
           +++ +NH  +   A +F V+F +N  W+
Sbjct: 127 DVLLYNHQGFVTEATIFNVAFHRNGQWI 154


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 235 LLERNAKEYCMFLIVIVIVKNQIHWQMKLLWN 330
           LL+    EY   LI  V+   Q+HWQ  L+ N
Sbjct: 137 LLQNKLHEYQKKLITRVLDMYQLHWQRDLVLN 168


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +3

Query: 354 PTPSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIK 533
           P P  T V+ +P L +      +I       E  +  +   I  S   ++      VD+ 
Sbjct: 219 PAPGPTAVSASPSLQSMPPTNGVIPGAQPSIEASIEKESTSIRNSTVTNDRVVNTTVDVS 278

Query: 534 KQVTVETT 557
           +  TVET+
Sbjct: 279 QSQTVETS 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,758
Number of Sequences: 5004
Number of extensions: 52753
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)