Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N13
         (866 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D26018-1|BAA05039.1|  491|Homo sapiens KIAA0039 protein.               37   0.083
BC108909-1|AAI08910.1|  427|Homo sapiens POLD3 protein protein.        37   0.083
BC108908-1|AAI08909.1|  360|Homo sapiens POLD3 protein protein.        37   0.083
BC020587-1|AAH20587.1|  168|Homo sapiens POLD3 protein protein.        37   0.083
CT841517-1|CAJ86447.1| 2151|Homo sapiens dJ694E4.2 protein.            31   4.1  
AL031255-4|CAI22448.1| 2151|Homo sapiens chromosome 22 open read...    31   4.1  

>D26018-1|BAA05039.1|  491|Homo sapiens KIAA0039 protein.
          Length = 491

 Score = 37.1 bits (82), Expect = 0.083
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 DEIPPT-PSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDE 503
           + +P T P    V  + G    K++R +  KTY D EG ++T+K    ESC+D E
Sbjct: 385 EPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSE 439


>BC108909-1|AAI08910.1|  427|Homo sapiens POLD3 protein protein.
          Length = 427

 Score = 37.1 bits (82), Expect = 0.083
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 DEIPPT-PSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDE 503
           + +P T P    V  + G    K++R +  KTY D EG ++T+K    ESC+D E
Sbjct: 321 EPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSE 375


>BC108908-1|AAI08909.1|  360|Homo sapiens POLD3 protein protein.
          Length = 360

 Score = 37.1 bits (82), Expect = 0.083
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 DEIPPT-PSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDE 503
           + +P T P    V  + G    K++R +  KTY D EG ++T+K    ESC+D E
Sbjct: 254 EPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSE 308


>BC020587-1|AAH20587.1|  168|Homo sapiens POLD3 protein protein.
          Length = 168

 Score = 37.1 bits (82), Expect = 0.083
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 DEIPPT-PSATIVNITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDE 503
           + +P T P    V  + G    K++R +  KTY D EG ++T+K    ESC+D E
Sbjct: 62  EPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSE 116


>CT841517-1|CAJ86447.1| 2151|Homo sapiens dJ694E4.2 protein.
          Length = 2151

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 387 PGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIKKQVTVETT 557
           P L NA++  K I    + E+  +++ KE I+ +C  D +HT  +  +      E T
Sbjct: 412 PFLFNAREPEKEISGRCSGEKEPVVSPKENIHNNCIQDSLHTGNSSSLMPNSFTEAT 468


>AL031255-4|CAI22448.1| 2151|Homo sapiens chromosome 22 open reading
           frame 30 protein.
          Length = 2151

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 387 PGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIKKQVTVETT 557
           P L NA++  K I    + E+  +++ KE I+ +C  D +HT  +  +      E T
Sbjct: 412 PFLFNAREPEKEISGRCSGEKEPVVSPKENIHNNCIQDSLHTGNSSSLMPNSFTEAT 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,681,811
Number of Sequences: 237096
Number of extensions: 1806321
Number of successful extensions: 6598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6598
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)