Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N12
(972 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 36 0.064
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 34 0.15
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 34 0.15
07_01_0479 + 3606663-3607448 32 0.79
05_01_0142 - 940421-940701,941262-941574 32 0.79
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 31 1.4
02_02_0240 + 8196140-8198248,8198381-8198650 31 1.8
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.4
07_03_0817 - 21735283-21735358,21735719-21735796,21735885-217359... 29 4.2
12_02_0299 - 17051570-17052474,17053542-17053755 29 7.4
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 35.5 bits (78), Expect = 0.064
Identities = 25/79 (31%), Positives = 28/79 (35%)
Frame = -3
Query: 754 GPFGKNPHXPXPFXGFXPFXGPFGXKXFXXGFPPXFXGXPXYPPXGGXKPXPPPXXPXXX 575
G F P P+ P +G G PP F P PP G PPP P
Sbjct: 16 GGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPG----PPPPHQPQ-- 69
Query: 574 GFFXXGXGXGPQKXTPXPP 518
F G G Q+ P PP
Sbjct: 70 --FNFGPGPPQQQQPPPPP 86
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -3
Query: 658 PPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGPQKXTPXPPGXXG 506
PP G P PP PPP P G G P P PP G
Sbjct: 12 PPPQGGFPPQPPPMNPYGPPPPQQP-AYGHMPPPQGAPPPFLAPPPPPPPG 61
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 34.3 bits (75), Expect = 0.15
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = -1
Query: 660 FPPXFXEX---QXTPXXGXXNPXPPPXXPG--XXXFXXGEXGXGPKKXPPXPP 517
+PP + Q P G P PPP PG + G GP + PP PP
Sbjct: 53 YPPQYPNPNLPQYYPQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPAQPPPPPP 105
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = -3
Query: 664 GFPPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGPQKXTPXPPGXXGFF 500
G+P G YPP G PP P G + G P P PPG G+F
Sbjct: 43 GYPQS--GPYPYPPPSGAV-YPPQGYPSSHGVYPPPQGPYPPPHQPPPPGYQGYF 94
Score = 29.9 bits (64), Expect = 3.2
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = -3
Query: 721 PFXGFXPFXGPFGXKXFXXGFPPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGP 542
P G P+ P G G+P P PP G P P P G+F G
Sbjct: 45 PQSGPYPYPPPSGAVYPPQGYPSSHGVYP--PPQGPYPPPHQPPPPGYQGYF----NQGQ 98
Query: 541 QKXTPXPP 518
Q P PP
Sbjct: 99 QPYYPPPP 106
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 0.79
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = -3
Query: 664 GFPPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGPQKXTPXPPGXXG 506
G PP F G P PP + PP P G G + P PP G
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPG 244
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 31.9 bits (69), Expect = 0.79
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 664 GFPPXFXGXPX-YPPXGGXKPXPPPXXPXXXGFFXXGXG-XGPQKXTPXPPG 515
G+PP P YPP G P PP P G + G PQ P P G
Sbjct: 28 GYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGG 79
Score = 31.9 bits (69), Expect = 0.79
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 664 GFPPXFXGXPX--YPPXGGXKPXPPPXXPXXXGFFXXGXGXGPQKXTPXPPG 515
G+PP P YPP G P PP P G + G PQ PPG
Sbjct: 34 GYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGY-PQPGGYPPPG 84
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -3
Query: 721 PFXGFXPFXGPFGXKXFXXGFPPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGP 542
P+ G P P G PP + P PP G PPP P G P
Sbjct: 418 PYMGAPPPPPPGSYAPVPWGQPPPYASYPP-PPPGSSMYNPPPPAPGQATPPPYGVQYAP 476
Query: 541 QKXTPXPPG 515
PPG
Sbjct: 477 PPAPIPPPG 485
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 609 NPXPPPXXPGXXXF--XXGEXGXGPKKXPPXPPGXGXF 502
+P PPP PG G G P PP PPG +
Sbjct: 592 HPPPPPPIPGQPQVIRMPGSMGPMPTNIPPPPPGQNPY 629
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -3
Query: 658 PPXFXGXPXYPPXGGXKPXPPPXXPXXXGFFXXGXGXGPQKXTPXPPGXXG 506
PP G P PP G P PPP P G +K P PP G
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSP----PPPPPPGGKKGGPPPPPPKG 384
>07_03_0817 -
21735283-21735358,21735719-21735796,21735885-21735945,
21736038-21736069,21736144-21736221,21738046-21738213,
21738711-21738897,21740019-21740160
Length = 273
Score = 29.5 bits (63), Expect = 4.2
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Frame = -3
Query: 751 PFGKNPHXPXPFXGFXPFXGPFGXKXFXXG-----------FPPXFXGXPXYPPXGGXKP 605
P G + P P GF P G G G FP F G PP G P
Sbjct: 174 PLGHDDAFPGPGAGFYPHSGIGGGGSMHVGPNDPRFFPSNPFPVPFGGPGSVPPGGRYDP 233
Query: 604 XPPPXXP 584
PP P
Sbjct: 234 IGPPDVP 240
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 7.4
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 751 PFGKNPHXPXPFXGFXPFXGPFGXKXFXXGFPPXFXGXPXYPPXGGXKPXPPPXXP 584
P P P P PF PF FPP P PP P PPP P
Sbjct: 282 PIFSPPSPPPPPPPAFPF--PFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFP 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,441
Number of Sequences: 37544
Number of extensions: 305095
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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