Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N11
(1093 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 33 0.36
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.83
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.83
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.83
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 31 1.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.4
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.5
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 2.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.5
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 30 3.3
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 30 3.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 3.3
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.4
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 4.4
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 7.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 7.7
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 29 7.7
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 29 7.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 7.7
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 7.7
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 33.1 bits (72), Expect = 0.36
Identities = 25/76 (32%), Positives = 26/76 (34%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
PG A P P P P AP P G T P SPGP P P P+
Sbjct: 144 PGEAGPAGPAGP-PGPDGQPGAPGPN--GQPGAAGTTSTNEPGSPGPAGPPGP-AGPAGE 199
Query: 595 PXXXAXSDARPXXPPG 642
S P PPG
Sbjct: 200 DAAAPESPPGPPGPPG 215
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.83
Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Frame = +1
Query: 337 PXTAXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXG-X 513
P A P T T P P P A +P P PR P P PR + P G
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSP---PPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSL 312
Query: 514 KXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARPXXPP 639
+P G P P Q P + + P P
Sbjct: 313 PPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 354
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.83
Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Frame = +1
Query: 337 PXTAXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXG-X 513
P A P T T P P P A +P P PR P P PR + P G
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSP---PPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSL 333
Query: 514 KXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARPXXPP 639
+P G P P Q P + + P P
Sbjct: 334 PPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 375
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.83
Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Frame = +1
Query: 337 PXTAXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXG-X 513
P A P T T P P P A +P P PR P P PR + P G
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSP---PPPPAGGSP--PPPRAGSPPPPPPPRGSPPTGSL 318
Query: 514 KXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARPXXPP 639
+P G P P Q P + + P P
Sbjct: 319 PPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 360
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 31.5 bits (68), Expect = 1.1
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Frame = +1
Query: 304 KARTKXXAKXAPXTAXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQ-RPHPRXXHXPXA 480
K K K P + P + P+ +P P + +P P+ P
Sbjct: 216 KPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKP 275
Query: 481 ---PHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARP 627
P P K H + P P P P + P+ P + +P
Sbjct: 276 NPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKPKPRPKPELKP 327
Score = 29.9 bits (64), Expect = 3.3
Identities = 26/119 (21%), Positives = 33/119 (27%)
Frame = +1
Query: 304 KARTKXXAKXAPXTAXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAP 483
K K K P + P + P+ P P P +P P+ P P
Sbjct: 196 KPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEP-KPKPKPKPKPE-P 253
Query: 484 HPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARPXXPPGDTRRXK 660
P+T K P P P P P S +P P R K
Sbjct: 254 KPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSK 312
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/79 (24%), Positives = 24/79 (30%)
Frame = +1
Query: 403 PRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTX 582
P+ DP P P +P P+ P P P+ K P P P P
Sbjct: 179 PKPDPKPKPKPKP-KPKPKPNPKPE-PKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPN 236
Query: 583 PSQXPXXXAXSDARPXXPP 639
P P +P P
Sbjct: 237 PKPEPKPKPKPKPKPEPKP 255
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 PG-PAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQ 591
PG P P P PR P A P G T + P +PG P P
Sbjct: 173 PGRPGTDAAPGSPGPRGPPGP-AGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGP 231
Query: 592 XPXXXAXSDARPXXPPG 642
A + P PPG
Sbjct: 232 PGPPGAPGNDGPPGPPG 248
Score = 28.7 bits (61), Expect = 7.7
Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAP-HPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQ 591
PGPA P P P AP P + P G P + GP P P P
Sbjct: 200 PGPAGE--PGTPAISEPLTPGAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGP 255
Query: 592 XPXXXAXSDARPXXPPG 642
+ P PPG
Sbjct: 256 DGPPGVDGQSGPPGPPG 272
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAP-HPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQ 591
PGPA P P P AP P + P G P + GP P P P
Sbjct: 195 PGPAGE--PGTPAISEPLTPGAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGP 250
Query: 592 XPXXXAXSDARPXXPPG 642
A + P PPG
Sbjct: 251 DGPPGADGQSGPPGPPG 267
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAP-HPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQ 591
PGPA P P P AP P + P G P + GP P P P
Sbjct: 195 PGPAGE--PGTPAISEPLTPGAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGP 250
Query: 592 XPXXXAXSDARPXXPPG 642
A + P PPG
Sbjct: 251 DGPPGADGQSGPPGPPG 267
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 403 PRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTX 582
P+ +PGP P P P P P P P G + + P PGP P +
Sbjct: 936 PKPNPGPG----PGPPSPNGPSDPNKPSPNGPSPNG---PNGPSDPNKPGPSGPNGP-SD 987
Query: 583 PSQXPXXXAXSDARPXXPPG 642
P++ P SD P G
Sbjct: 988 PNK-PSPNGPSDPVKPSPSG 1006
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/73 (26%), Positives = 22/73 (30%)
Frame = +1
Query: 418 GPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQXP 597
GP P +P P P P P P G +P P P P+P P
Sbjct: 981 GPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPN--GPSPNGPSP-NGPSPNGPTPNWP 1037
Query: 598 XXXAXSDARPXXP 636
S P P
Sbjct: 1038 SPNGPSPNGPNGP 1050
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/76 (31%), Positives = 28/76 (36%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
P P P P P P AP + P G T+ +P PGP P P P Q
Sbjct: 210 PPPPGPPGPPGP-PGNDGQPGAPG-QDGQP-GAPGTNTVNSPGGPGPAGPPGPPGPPGQD 266
Query: 595 PXXXAXSDARPXXPPG 642
A + P PPG
Sbjct: 267 GSGGA-AQPGPPGPPG 281
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 29.9 bits (64), Expect = 3.3
Identities = 28/113 (24%), Positives = 31/113 (27%), Gaps = 1/113 (0%)
Frame = +1
Query: 307 ARTKXXAKXAPXTAXQX-TPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAP 483
A + A P A Q P E +T P PGP Q HP P AP
Sbjct: 196 APARQGAPGPPGPAGQPGQPGEPGHSDTSSTAGPPGPPGPGGPPG-QDGHPGDAGAPGAP 254
Query: 484 HPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQXPXXXAXSDARPXXPPG 642
A P + P GP P P D P G
Sbjct: 255 GQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGPPGDDGHPGEDGG 307
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.9 bits (64), Expect = 3.3
Identities = 26/128 (20%), Positives = 32/128 (25%)
Frame = +3
Query: 450 PPPXXPXPXRPPPENXXXXRXKAHAXPRDPXEPXTXXXAGTANXAXPAAXXASXQXXXXX 629
P P P + P + A P P N PA A
Sbjct: 298 PVPQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQA 357
Query: 630 XXTRGHQEXKXPXTNXAXXRATTPTXXRPPXXXXQXRPXNPRXXXTPPPXXAPXXXPXRH 809
Q P A P PP Q P + + PP P +
Sbjct: 358 PAPPVQQAPPKPTPQQAP-----PVRQNPPMPAVQQAPSSQQATQAPPKPAPQQAPPVQQ 412
Query: 810 NPPXHXPT 833
NPP P+
Sbjct: 413 NPPKPTPS 420
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 403 PRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTH 525
P PGP P P P P P P T P G + H
Sbjct: 246 PPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTRRPPGHQGHH 286
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 PRXDPGPAAXXTPQRPHPRXXHXPXAPH-PRTAXPXGXKXTHXRATPXSPGPXXXPAP 573
P P P P P P P P T P G R P PGP P
Sbjct: 223 PSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTRRPP 280
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -2
Query: 420 PGVX-ARXPGGVXSXXXGLGGGXLXGXXGXXFRXRFGPGLPGVGGCXFSGS 271
PG+ A PG G+ G G G F PG PG GG GS
Sbjct: 263 PGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGPGMPGS 313
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.5 bits (63), Expect = 4.4
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Frame = +1
Query: 421 PAAXXTPQRPHPRXXHXPXAPHPR--TAXPXGXKXTHXRATPXSPGPXXXPAP--XTXPS 588
PAA P P P P T P G P +PGP P P P
Sbjct: 180 PAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGPD 239
Query: 589 QXPXXXAXSDARPXXPPG 642
A A P PPG
Sbjct: 240 GASPTAAPGAAGPPGPPG 257
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
P P A P P P P + + +H AT +P P P P + PS
Sbjct: 113 PPPTASSAPPVPPPAPV--PAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSK 170
Query: 595 P 597
P
Sbjct: 171 P 171
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
P P A P P P P + + +H AT +P P P P + PS
Sbjct: 113 PPPTASSAPPVPPPAPV--PAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSK 170
Query: 595 P 597
P
Sbjct: 171 P 171
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 14 PXREXVGEHXNEXVXXQGPGARTGXPGSRTSXAHKXNDGRGSKEDKXQTPXP 169
P ++ VGE QGP G PG + H G+G + + TP P
Sbjct: 154 PGQDAVGEGPGP-AGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRG-TPGP 203
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +1
Query: 439 PQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXP 585
P +P P P P P G A P PGP P P P
Sbjct: 161 PCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPP 209
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 5.8
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Frame = +1
Query: 268 HRXRKXATXHXRKARTKXXAKXAPXTAXQXTPTETXXXRXHATRXPRXDPG-PAAXXTPQ 444
H ++ A + A+ + + AP T P + T P P+A P
Sbjct: 560 HHAQQQAAAQAQAAQAQQASTPAPSTTP--APQAASSSQAAPTSGANTQPATPSASNQP- 616
Query: 445 RPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPS 588
P P H A G RA PGP P T PS
Sbjct: 617 -PTPASASASTTLHVEPASVAGGSQAGSRAPSAGPGPSATPDSSTIPS 663
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 7.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +1
Query: 421 PAAXXTPQRPHPRXXHXPXAPHPR--TAXPXGXKXTHXRATPXSPGPXXXPAP--XTXPS 588
PAA P P P P T P G P PGP P P P
Sbjct: 181 PAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPD 240
Query: 589 QXPXXXAXSDARPXXPPG 642
A A P PPG
Sbjct: 241 GASPTAAPGAAGPPGPPG 258
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +1
Query: 346 AXQXTPTETXXXRXHATRXPRXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTH 525
A + TE + + P +P P + P P P T P
Sbjct: 573 APEEPATEVPNPQPPSPPSPEPEPEPKSTPEPVTDGPNESQSTALPQQTTDAPVDPVT-- 630
Query: 526 XRATPXSPGPXXXPAPXTXPSQXP 597
A+P +P P P+P P P
Sbjct: 631 -EASPLNPQPPPPPSPSPEPEPEP 653
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 7.7
Identities = 18/74 (24%), Positives = 23/74 (31%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
P P+ RP P AP P P R P +PG P P++
Sbjct: 758 PHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRV 817
Query: 595 PXXXAXSDARPXXP 636
P + P P
Sbjct: 818 PTPSNGAPEIPARP 831
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.7 bits (61), Expect = 7.7
Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Frame = +1
Query: 397 RXPRXDPG-PAAXXTPQRPHPRXXHXPXAPH----PRTAXPXGXKXTHXR----ATPXSP 549
+ P PG P A TP P P P P A P G + + +P P
Sbjct: 186 KGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQP 245
Query: 550 GPXXXPAPXTXPSQXPXXXAXSDARPXXPPGD 645
GP P P A A P PG+
Sbjct: 246 GPKGPNGPDGQPGADGNPGAPGPAGPPGSPGE 277
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +1
Query: 406 RXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXR-ATPXSPGPXXXPAPXTX 582
R PGP Q P A P A P G T + P PGP P T
Sbjct: 170 RGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTEYKPGQPGRPGP-QGPRGETG 228
Query: 583 PSQXP 597
P+ P
Sbjct: 229 PAGNP 233
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +1
Query: 406 RXDPGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXR-ATPXSPGPXXXPAPXTX 582
R PGP Q P A P A P G T + P PGP P T
Sbjct: 164 RGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTEYKPGQPGRPGP-QGPRGETG 222
Query: 583 PSQXP 597
P+ P
Sbjct: 223 PAGNP 227
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 7.7
Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Frame = +1
Query: 397 RXPRXDPG-PAAXXTPQRPHPRXXHXPXAPH----PRTAXPXGXKXTHXR----ATPXSP 549
+ P PG P A TP P P P P A P G + + +P P
Sbjct: 186 KGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQP 245
Query: 550 GPXXXPAPXTXPSQXPXXXAXSDARPXXPPGD 645
GP P P A A P PG+
Sbjct: 246 GPKGPNGPDGQPGADGNPGAPGPAGPPGSPGE 277
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 7.7
Identities = 18/74 (24%), Positives = 23/74 (31%)
Frame = +1
Query: 415 PGPAAXXTPQRPHPRXXHXPXAPHPRTAXPXGXKXTHXRATPXSPGPXXXPAPXTXPSQX 594
P P+ RP P AP P P R P +PG P P++
Sbjct: 758 PHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRV 817
Query: 595 PXXXAXSDARPXXP 636
P + P P
Sbjct: 818 PTPSNGAPEIPARP 831
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.129 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,498
Number of Sequences: 27780
Number of extensions: 203087
Number of successful extensions: 1279
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2939888878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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