Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N10
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    37   0.003
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   3.4  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   3.4  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   4.5  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   7.8  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   7.8  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 191 IAGTLFLGYCVYFDQQRRKDPLFKKKLRER 280
           +  T  +GY +YFD +RR DP F+K L+ R
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRR 39


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = -1

Query: 815  IFVVNSLVTYFAKNMFWKIQN-HEAIR---SASFNIIYE*VYLQKTDKNKTKINYYGHHV 648
            + +V SL T         +   H  IR   S  FN + E V   + D++   I Y     
Sbjct: 963  VLLVTSLKTMLTSKEEINLSTLHTQIRLLLSCLFNQLIEVVTEDQVDESTKGILYEIMST 1022

Query: 647  LLSSLQIHNFLFDIFFLHYVAPRLHRGS 564
            L    +   FLFD+ +LH + P L   S
Sbjct: 1023 LFVFSRAFPFLFDLSYLHLLKPYLRSAS 1050


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 173 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 253
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 536 LKKQMEDW-SWHSLLKYTKQLFSLSTNSHSL 447
           L+   ++W +W   ++Y K L  +S N HS+
Sbjct: 126 LRDPNDEWKAWQKRMRYKKNLTKISKNHHSI 156


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 371 KSLHSFMIVHVWNRSSEGXETSKHFVVHLVFALS 270
           K +H F++ HV++ S  G +  K   V L F +S
Sbjct: 437 KPVHVFLMRHVYHSSISGFKLKKSHAVLLTFLIS 470


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 407 QQLFAELNLLQEKSLHSFMIVHVWNRSSEGXETSKHFVVHLVFALSTSF*TADPCAFAGQ 228
           + + A   +LQ KS +  M + V  +  EG   SK  ++H++  + T+  T     F G+
Sbjct: 162 EHVLATQTILQRKSKN--MRIRVNGKLPEGI-ASKDLILHIIGVIGTAGGTGSVIEFCGE 218

Query: 227 SI 222
           +I
Sbjct: 219 AI 220


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -1

Query: 491 YTKQLFSLSTNSHSLPEMFDSSFKITCSQQLFAELNLLQEKSLHSFMIVHVWNRSSEGXE 312
           +T QL  L T   S+PE+ +   K + S +LF  +  L++ S+    I H  NRS+E   
Sbjct: 67  FTLQLGDLITEHTSVPELNEILDKFSQSNELFT-MRFLEKASI----IAHK-NRSAELAR 120

Query: 311 TSKHFVVHLVFALS 270
             + +  + +  LS
Sbjct: 121 RLRTYAANAMIDLS 134


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 346 TIMKLCR--DFSCNRFNSAKSCW 408
           T+ K+C+  + SC RFN  K  W
Sbjct: 84  TVQKVCKKLNISCRRFNFEKEYW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,839
Number of Sequences: 5004
Number of extensions: 65432
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)