Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N10
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related...    32   0.45 
Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    29   4.2  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   5.6  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   5.6  
U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    28   7.4  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    28   7.4  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   7.4  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   7.4  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   7.4  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    28   7.4  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 31/90 (34%), Positives = 49/90 (54%)
 Frame = +3

Query: 336 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQTMPAP 515
           PD+ D   MQRFFLQ++Q                H+  AV +CG+++QLLS+ QQT+   
Sbjct: 72  PDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIFQQTLSED 131

Query: 516 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 605
            F  ++++LP   ERL     A+++  + E
Sbjct: 132 QFRAVVQQLPSTRERLAEMFGAKADEAENE 161



 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +2

Query: 149 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRYPRR 328
           ++   ++ + +A GIAG  FLGYC+YFD +R   P +K K+R++R  AQ  A     PRR
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKR-RAQAGAG-GMAPRR 62


>U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related
           protein 15 protein.
          Length = 114

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 148 NDGNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKTKCTTKC 303
           ND   ++N  +S R+CG ++   +  L      G A+Q E+ RA   C+T C
Sbjct: 23  NDFQPRDNKHHSYRSCGESLSRRVAFL----CNGGAIQTEILRALDCCSTGC 70


>Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical
           protein F32B4.2 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 438 HLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSERLRSSMK 578
           H+  A+ + G+T QLL VL+ ++    F  + K LP    R+   ++
Sbjct: 108 HMANAIVLTGETAQLLKVLRGSISPAHFANIQKYLPSADLRVHQLLQ 154


>U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical
           protein F12A10.6 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 315 RDLEAFCCAFSLRSLNFFLNSGSLRLCWS----KYTQ*PKNSVPAI 190
           RD E    A  +       NSG+L +CW     ++   P+NS+PAI
Sbjct: 51  RDKEKVRQAVEMVGAAKIFNSGNLPICWKFQFRQFADLPENSIPAI 96


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 452 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 360
           SL  + ++SF+ + S++ F + NL+QEK  H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 DQQRRKDPLFKKKLRERRLNAQQNASRSRYPR 325
           D+ R+KD   K + RER    + + SRSR PR
Sbjct: 73  DRDRKKDRKKKDRSRERDRERRSSRSRSRSPR 104


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 DQQRRKDPLFKKKLRERRLNAQQNASRSRYPR 325
           D+ R+KD   K + RER    + + SRSR PR
Sbjct: 73  DRDRKKDRKKKDRSRERDRERRSSRSRSRSPR 104


>U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform c protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 9   DITNESRNRCRACRLRNCLEGGMNPKH 35


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 142 DITNESRNRCRACRLRNCLEGGMNPKH 168


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 190 DITNESRNRCRACRLRNCLEGGMNPKH 216


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = -1

Query: 512 SWHSLLKYTKQLFSLSTNSHSLPEMFD-------SSFKITCSQQLFAELNLLQEKSLHSF 354
           S H L +  KQLFS   ++ +LP + D       S FKI   Q L  E N +    + + 
Sbjct: 290 SIHELTEQEKQLFSSICSAENLPIVLDECLKSLTSPFKIRVEQLLSTEKNAITIFKMGNI 349

Query: 353 MIVHVWNRSSEGXETSKHFVVHLVFALST 267
           +I +  N+         +F + L   + T
Sbjct: 350 LIFYA-NKFETLIRKDSYFTIMLADLVKT 377


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 581 EEQRNAGRRCRIKNCV 628
           +EQRNA R CR+K C+
Sbjct: 68  KEQRNACRSCRLKECI 83


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 581 EEQRNAGRRCRIKNCV 628
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 581 EEQRNAGRRCRIKNCV 628
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 581 EEQRNAGRRCRIKNCV 628
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 139 DITNESRNRCRACRLRNCLEGGMNPKH 165


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 148 DITNESRNRCRACRLRNCLEGGMNPKH 174


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 572 DEGEEQRNAGRRCRIKNCVFEEMKVKH 652
           D   E RN  R CR++NC+   M  KH
Sbjct: 141 DITNESRNRCRACRLRNCLEGGMNPKH 167


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 581 EEQRNAGRRCRIKNCV 628
           +EQRNA R CR+K C+
Sbjct: 88  KEQRNACRSCRLKECI 103


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = -1

Query: 509 WHSLLKYTKQLFSLSTNSHSLPEMFD--SSFKITCSQQLFAELNLLQ---EKSLHSFMIV 345
           +H ++K+  ++   ST S   P +    +  K+T + ++ A  N+L    +K+LH+   +
Sbjct: 289 YHLVIKHADEIIFKSTRSPQEPGVVRCINMIKMT-TLEMMACCNVLACRPQKTLHNVRDM 347

Query: 344 HVWNRSSEGXETSKHFVVHLVFAL 273
             W+  + G   +++F  H+ + L
Sbjct: 348 LEWSNRTSGPLLTRYFTPHIHYIL 371


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 484 LVYFSKLCQLQSSICFLRSCQKFQNAS 564
           L+YF  +C L S IC ++SC     AS
Sbjct: 174 LIYFQGVCTLCSLICNIKSCSIVWKAS 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,443,720
Number of Sequences: 27780
Number of extensions: 370534
Number of successful extensions: 1216
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)