Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N04
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 37 0.023
03_02_0973 - 12826036-12826131,12826379-12826462,12826542-128265... 33 0.22
07_01_1201 - 11419851-11419913,11420090-11420311 31 1.2
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.5
03_06_0149 - 31987183-31987630,31987813-31987874 29 4.7
12_02_1188 + 26801833-26802225 29 6.2
04_03_1035 - 21887562-21890030 29 6.2
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.1
01_03_0308 - 14883728-14884120 28 8.1
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 36.7 bits (81), Expect = 0.023
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 725 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 618
R R RR GG+V+G+ R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>03_02_0973 -
12826036-12826131,12826379-12826462,12826542-12826595,
12826742-12826830,12826889-12826985,12827066-12827074,
12827419-12827478,12828082-12828204,12828654-12828758,
12830203-12830535
Length = 349
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 648 VRSPVP-TLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRXKLGCVPNPPFSPTAAPY 824
+R P P T P +G S+FL L + SS V R G PNP F+P A P+
Sbjct: 8 LRLPTPSTAPSSGASSSFLSLPPTLLRQARGGAAASSALVARAASGGSPNPLFNPRADPF 67
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 542 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 688
L PP Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -1
Query: 656 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 477
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 476 TCSFLRYPLILWITVLPPLSELIPLAAA 393
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 621
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 695 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 597
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 761 LHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGE 627
++R +P + + A RR+ GG S R HE AF E
Sbjct: 493 VYRASLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSE 537
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 509
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 601 DRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREAWR 720
+R +I G + PS A L+R C +CPP E WR
Sbjct: 65 ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,351,904
Number of Sequences: 37544
Number of extensions: 499293
Number of successful extensions: 1521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -