Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N03
(982 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein. 38 0.074
U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein. 38 0.074
D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein. 38 0.074
D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein. 38 0.074
BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein. 38 0.074
AB209345-1|BAD92582.1| 774|Homo sapiens atrophin-1 variant prot... 38 0.074
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 36 0.23
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 36 0.30
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 36 0.30
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 36 0.30
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 36 0.30
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 36 0.30
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 36 0.30
BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein. 34 0.69
BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein. 34 0.69
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 33 1.6
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 32 3.7
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 32 3.7
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 32 3.7
X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (... 32 3.7
X07881-1|CAA30728.1| 309|Homo sapiens proline-rich protein G1 p... 32 3.7
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 32 3.7
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 32 3.7
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 32 3.7
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 32 3.7
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 32 3.7
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 32 3.7
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 31 4.9
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 31 4.9
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 31 4.9
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 31 4.9
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 31 4.9
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 31 4.9
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 31 4.9
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 31 4.9
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 31 4.9
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 31 4.9
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 31 4.9
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 31 8.5
X07704-1|CAA30542.1| 234|Homo sapiens Po protein protein. 31 8.5
S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein. 31 8.5
BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein. 31 8.5
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ... 31 8.5
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 31 8.5
AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-... 31 8.5
AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-... 31 8.5
AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-... 31 8.5
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein. 31 8.5
AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collage... 31 8.5
>U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.
Length = 1190
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 690 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Query: 798 P 800
P
Sbjct: 749 P 749
>U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.
Length = 1184
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 684 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 742
Query: 798 P 800
P
Sbjct: 743 P 743
>D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.
Length = 1182
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 685 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 743
Query: 798 P 800
P
Sbjct: 744 P 744
>D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.
Length = 1185
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 685 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 743
Query: 798 P 800
P
Sbjct: 744 P 744
>BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.
Length = 1191
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 691 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 749
Query: 798 P 800
P
Sbjct: 750 P 750
>AB209345-1|BAD92582.1| 774|Homo sapiens atrophin-1 variant
protein.
Length = 774
Score = 37.5 bits (83), Expect = 0.074
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
PT GP P G + P P PP AS Q +PA+ + TP+ P SP
Sbjct: 274 PTVGPGPLP-PAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 332
Query: 798 P 800
P
Sbjct: 333 P 333
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 35.9 bits (79), Expect = 0.23
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +2
Query: 830 YPETLGPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRG 955
YP LGPP P RG P P + P P G PP GRG
Sbjct: 168 YPPGLGPPPPMGRGAPPPGMMGPPP-GMRPPMGPMGIPPGRG 208
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 959 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 1015
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 1016 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 959 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 1015
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 1016 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 959 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 1015
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 1016 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 959 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 1015
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 1016 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 959 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 1015
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 1016 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 35.5 bits (78), Expect = 0.30
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 4/167 (2%)
Frame = +3
Query: 489 GSXTPCAPXVRLRPAVSAPXXG----GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG 656
G TP P R + + P G TG P +G++ G GP + P G
Sbjct: 853 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 912
Query: 657 LAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTR 836
P PP + P QR Q P G P P G P G
Sbjct: 913 FPGPKGPPGPPGKDG--LPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERG 969
Query: 837 KPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P P P GE P PG P K+G G + P
Sbjct: 970 HPGPPGPP--GEQGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1013
>BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 34.3 bits (75), Expect = 0.69
Identities = 34/148 (22%), Positives = 46/148 (31%), Gaps = 9/148 (6%)
Frame = +3
Query: 561 TGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG------LAXXPKRPRPPXXEASXKTXXP 722
+G P R G P G + P+G P +P P + ++ P
Sbjct: 33 SGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 92
Query: 723 XQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXN---PAGFTRKPWAPXXPXFGETLXPXPX 893
R KP PQG + + P P G P G + P P E P
Sbjct: 93 PPRPGKPEGQ--PPQGGNQSQ-GPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 149
Query: 894 XPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
HPG PP +G + P
Sbjct: 150 NQSQGPPPHPGKPEGPPPQGGNQSQGPP 177
>BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 34.3 bits (75), Expect = 0.69
Identities = 34/148 (22%), Positives = 46/148 (31%), Gaps = 9/148 (6%)
Frame = +3
Query: 561 TGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRG------LAXXPKRPRPPXXEASXKTXXP 722
+G P R G P G + P+G P +P P + ++ P
Sbjct: 33 SGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 92
Query: 723 XQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXN---PAGFTRKPWAPXXPXFGETLXPXPX 893
R KP PQG + + P P G P G + P P E P
Sbjct: 93 PPRPGKPEGQ--PPQGGNQSQ-GPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 149
Query: 894 XPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
HPG PP +G + P
Sbjct: 150 NQSQGPPPHPGKPEGPPPQGGNQSQGPP 177
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 33.1 bits (72), Expect = 1.6
Identities = 30/114 (26%), Positives = 35/114 (30%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
P P P G P P PP S P PQ P P
Sbjct: 132 PPATPPTSGAPPGSGPGPT-PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PP 186
Query: 798 PLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXG 959
P V P ++ P P G+ + P GLS PG PP+ G G
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGK-MPGGPKPGGGPGLSTPGGHPKPPRRGGG 239
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 31.9 bits (69), Expect = 3.7
Identities = 30/114 (26%), Positives = 34/114 (29%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
P P P G P P PP S P PQ P P
Sbjct: 132 PPATPPTSGAPPGSGPGPT-PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PP 186
Query: 798 PLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXG 959
P V P ++ P P G+ + P GLS PG PP G G
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGK-MPGGPKPGGGPGLSTPGGHPKPPHRGGG 239
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 994 AVGAPGTPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 1051
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 1052 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1110
Query: 879 XPXPXXP 899
P P P
Sbjct: 1111 IPGPIGP 1117
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 994 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 1051
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 1052 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1110
Query: 879 XPXPXXP 899
P P P
Sbjct: 1111 IPGPIGP 1117
>X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (714
AA) protein.
Length = 714
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 563 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 620
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 621 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 679
Query: 879 XPXPXXP 899
P P P
Sbjct: 680 IPGPIGP 686
>X07881-1|CAA30728.1| 309|Homo sapiens proline-rich protein G1
protein.
Length = 309
Score = 31.9 bits (69), Expect = 3.7
Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Frame = +3
Query: 630 PXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHG 809
P +G P +P P + ++ P R KP PQG + + P P G
Sbjct: 41 PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQ--PPQGGNQSQ-GPPPRPG 97
Query: 810 VXN---PAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P G + P P E P HPG PP +G + P
Sbjct: 98 KPEGPPPQGGNQSQGPPPRPGEPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPP 156
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 1063 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 1120
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 1121 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1179
Query: 879 XPXPXXP 899
P P P
Sbjct: 1180 IPGPIGP 1186
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 32 AVGAPGTPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 89
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 90 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 148
Query: 879 XPXPXXP 899
P P P
Sbjct: 149 IPGPIGP 155
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 3.7
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Frame = +3
Query: 531 AVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXK 710
AV AP G G P G + + GP P G A + P+ P + +
Sbjct: 1063 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG-ARGIQGPQGPRGD-KGE 1120
Query: 711 TXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFT--RKPWAPXXP--XFGETL 878
P +R K + F QG P P G PAG + R P P P G
Sbjct: 1121 AGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANG 1179
Query: 879 XPXPXXP 899
P P P
Sbjct: 1180 IPGPIGP 1186
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 31.9 bits (69), Expect = 3.7
Identities = 30/114 (26%), Positives = 34/114 (29%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
P P P G P P PP S P PQ P P
Sbjct: 132 PPATPPTSGAPPGSGPGPT-PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PP 186
Query: 798 PLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXG 959
P V P ++ P P G+ + P GLS PG PP G G
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGK-MPGGPKPGGGPGLSTPGGHPKPPHRGGG 239
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 31.9 bits (69), Expect = 3.7
Identities = 30/114 (26%), Positives = 34/114 (29%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
P P P G P P PP S P PQ P P
Sbjct: 59 PPATPPTSGAPPGSGPGPT-PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PP 113
Query: 798 PLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXG 959
P V P ++ P P G+ + P GLS PG PP G G
Sbjct: 114 PPAAVPGPGPGPKQGPGPGGPKGGK-MPGGPKPGGGPGLSTPGGHPKPPHRGGG 166
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.9 bits (69), Expect = 3.7
Identities = 30/114 (26%), Positives = 34/114 (29%)
Frame = +3
Query: 618 PTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPX 797
P P P G P P PP S P PQ P P
Sbjct: 132 PPATPPTSGAPPGSGPGPT-PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PP 186
Query: 798 PLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXG 959
P V P ++ P P G+ + P GLS PG PP G G
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGK-MPGGPKPGGGPGLSTPGGHPKPPHRGGG 239
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 167 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 210
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 167 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 210
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 845 GPPXPXFRGNPXPLXLXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
GPP P RG P P + P P P G GRG PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3
chain protein.
Length = 1670
Score = 30.7 bits (66), Expect = 8.5
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 501 PCAPXVRLRPAVSAPXXGGNTGYPRXRGDNAGKNXXXQXP-------TXGPXXXKXPRGL 659
P P + PAV+ P G G+P RG N+G++ P T G PRG
Sbjct: 735 PGLPGAKGEPAVAMPGGPGTPGFPGERG-NSGEHGEIGLPGLPGLPGTPGNEGLDGPRG- 792
Query: 660 AXXPKRPRPP 689
P +P PP
Sbjct: 793 --DPGQPGPP 800
>X07704-1|CAA30542.1| 234|Homo sapiens Po protein protein.
Length = 234
Score = 30.7 bits (66), Expect = 8.5
Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Frame = +3
Query: 630 PXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHG 809
P P+ P +P+ P + ++ P KP + PQG + + P P G
Sbjct: 7 PQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPHPGKPERP--PPQGGNQSQ-GPPPHPG 63
Query: 810 VXN---PAGFTRKPWAPXXPXFGETLXPXPXXPXXXGLSHPGXXXXPPKEG 953
P G + P P E P HPG PP +G
Sbjct: 64 KPERPPPQGGNQSQGPPPTPGKPEGPPPQGGNQSQGPPPHPGKPERPPPQG 114
>S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein.
Length = 382
Score = 30.7 bits (66), Expect = 8.5
Identities = 39/160 (24%), Positives = 47/160 (29%), Gaps = 14/160 (8%)
Frame = +3
Query: 540 APXXGGNT--------GYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXX 695
AP GGN G P+ G P G P+G P+ P PP
Sbjct: 5 APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGK 63
Query: 696 EASX-----KTXXPXQRXAKPAQXF*TPQGXS-PXKXSPXPLHGVXNPAGFTRKPWAPXX 857
K+ P KP PQG + P P P P KP P
Sbjct: 64 PQGPPPQGDKSRSPRSPPGKPQGP--PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 121
Query: 858 PXFGETLXPXPXXPXXXGLSHPGXXXXPPKEGXGGXKTXP 977
P + P S PG PP +G + P
Sbjct: 122 PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPP 161
>BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.
Length = 1690
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 779 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 836
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 837 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 892
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 893 GDPGPQGISGKDGPAGLRGFP 913
>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
protein.
Length = 1806
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 895 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 952
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 953 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 1008
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 1009 GDPGPQGISGKDGPAGLRGFP 1029
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 30.7 bits (66), Expect = 8.5
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 501 PCAPXVRLRPAVSAPXXGGNTGYPRXRGDNAGKNXXXQXP-------TXGPXXXKXPRGL 659
P P + PAV+ P G G+P RG N+G++ P T G PRG
Sbjct: 735 PGLPGAKGEPAVAMPGGPGTPGFPGERG-NSGEHGEIGLPGLPGLPGTPGNEGLDGPRG- 792
Query: 660 AXXPKRPRPP 689
P +P PP
Sbjct: 793 --DPGQPGPP 800
>AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-1
protein.
Length = 1767
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 856 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 913
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 914 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 969
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 970 GDPGPQGISGKDGPAGLRGFP 990
>AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-a
isoform B protein.
Length = 1818
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 907 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 964
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 965 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 1020
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 1021 GDPGPQGISGKDGPAGLRGFP 1041
>AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-1
isoform A protein.
Length = 1806
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 895 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 952
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 953 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 1008
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 1009 GDPGPQGISGKDGPAGLRGFP 1029
>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
Length = 1084
Score = 30.7 bits (66), Expect = 8.5
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 501 PCAPXVRLRPAVSAPXXGGNTGYPRXRGDNAGKNXXXQXP-------TXGPXXXKXPRGL 659
P P + PAV+ P G G+P RG N+G++ P T G PRG
Sbjct: 149 PGLPGAKGEPAVAMPGGPGTPGFPGERG-NSGEHGEIGLPGLPGLPGTPGNEGLDGPRG- 206
Query: 660 AXXPKRPRPP 689
P +P PP
Sbjct: 207 --DPGQPGPP 214
>AB208844-1|BAD92081.1| 1017|Homo sapiens alpha 1 type XI collagen
isoform C preproprotein variant protein.
Length = 1017
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/141 (24%), Positives = 41/141 (29%)
Frame = +3
Query: 555 GNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXPXQRX 734
G TG P +G + G GP + P G P PP + P QR
Sbjct: 106 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG--LPGHPGQRG 163
Query: 735 AKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPXXXGL 914
Q P G P G P G P P P GE P
Sbjct: 164 ETGFQGKTGPPGPGGVVGPQGPT-GETGPIGERGHPGPPGPP--GEQGLPGAAG-KEGAK 219
Query: 915 SHPGXXXXPPKEGXGGXKTXP 977
PG K+G G + P
Sbjct: 220 GDPGPQGISGKDGPAGLRGFP 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,452,109
Number of Sequences: 237096
Number of extensions: 1353983
Number of successful extensions: 3290
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13102819592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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