Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N03
(982 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 34 0.13
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.2
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 30 2.9
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 30 2.9
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.7
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 8.8
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 28 8.8
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 34.3 bits (75), Expect = 0.13
Identities = 24/94 (25%), Positives = 30/94 (31%)
Frame = +3
Query: 540 APXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXX 719
AP G G P +G+N Q GP + P G A P +P P +
Sbjct: 138 APGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGG 197
Query: 720 PXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNP 821
R A PQG + P G P
Sbjct: 198 QRSRGTPGASGRPGPQGPAGAPGQPGRSGGAGTP 231
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 540 APXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPP 689
AP G G P +G+N Q GP + P G A P +P P
Sbjct: 138 APGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHP 187
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 29.9 bits (64), Expect = 2.9
Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Frame = +3
Query: 528 PAVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPK---RPRPPXXE 698
P + P GG G P G + G + P G+ P RP PP
Sbjct: 201 PCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRPGPPGEP 260
Query: 699 ASXKT-XXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXP 860
+ KT P R P + P G P P +G G + P P P
Sbjct: 261 GTYKTEVGPAGRAGAPGRP--GPPG-QPGPAGPPGENGKGGGQGPSGLPGPPGQP 312
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.9
Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Frame = +3
Query: 528 PAVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPK---RPRPPXXE 698
P + P GG G P G + G + P G+ P RP PP
Sbjct: 182 PCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRPGPPGEP 241
Query: 699 ASXKT-XXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXP 860
+ KT P R P + P G P P +G G + P P P
Sbjct: 242 GTYKTEVGPAGRAGAPGRP--GPPG-QPGPAGPPGENGKGGGQGPSGLPGPPGQP 293
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 29.5 bits (63), Expect = 3.8
Identities = 31/129 (24%), Positives = 38/129 (29%), Gaps = 2/129 (1%)
Frame = +3
Query: 480 GFLGSXTPCAPXVRLRPAVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGL 659
G G PC PA AP G G P +G + GP + P G
Sbjct: 120 GLTGGNGPCITC----PA-GAPGPAGAPGAPGPQGPSGAPGQDAVGEGPGPAGPQGPAGD 174
Query: 660 AXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXS--PXKXSPXPLHGVXNPAGFT 833
A P + P + R PQG + P + G PAG
Sbjct: 175 AGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAGAP 234
Query: 834 RKPWAPXXP 860
P P P
Sbjct: 235 GAPGGPGQP 243
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 29.1 bits (62), Expect = 5.1
Identities = 31/127 (24%), Positives = 37/127 (29%)
Frame = +3
Query: 480 GFLGSXTPCAPXVRLRPAVSAPXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGL 659
G G PC PA AP G G P +G + GP + P G
Sbjct: 120 GLTGGNGPCITC----PA-GAPGPAGAPGAPGPQGPSGAPGQDAVGGGPGPAGPQGPAGD 174
Query: 660 AXXPKRPRPPXXEASXKTXXPXQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRK 839
A P + P + R PQG + P G P G
Sbjct: 175 AGAPGQAGAPGHPGAPGQGGQRSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAP-GPAGA 233
Query: 840 PWAPXXP 860
P AP P
Sbjct: 234 PGAPGGP 240
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 833 PETLGPPXPXFRGNPXPLX--LXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
P G P P G+P P P GSLPP G GS PP
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 833 PETLGPPXPXFRGNPXPLX--LXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
P G P P G+P P P GSLPP G GS PP
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 833 PETLGPPXPXFRGNPXPLX--LXPTPVGSLPPGXXXXPXQGRGWGSXNPP 976
P G P P G+P P P GSLPP G GS PP
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.8
Identities = 31/141 (21%), Positives = 40/141 (28%), Gaps = 1/141 (0%)
Frame = +3
Query: 543 PXXGGNTGYPRXRGDNAGKNXXXQXPTXGPXXXKXPRGLAXXPKRPRPPXXEASXKTXXP 722
P G GYP G N + G + +G P PP + P
Sbjct: 636 PGSDGLPGYPGGPGQNGFPGLQGEPGLAGIDGKRGRQGSLGIPGLQGPPGDSFPGQPGTP 695
Query: 723 XQRXAKPAQXF*TPQGXSPXKXSPXPLHGVXNPAGFTRKPWAPXXPXFGETLXPXPXXPX 902
+ + A G + P PL V AG P P P P
Sbjct: 696 GYKGERGADGLPGLPGAQGPRGIPAPLRIVNQVAGQPGVDGMPGLPG-DRGADGLPGLPG 754
Query: 903 XXGL-SHPGXXXXPPKEGXGG 962
G +PG P +G G
Sbjct: 755 PVGPDGYPGTPGEPGMDGLPG 775
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +3
Query: 528 PAVSAPXXGGNTGYPRXRG--DNAGKNXXXQXP-TXGPXXXKXPRGLAXXPKRPRPP 689
P +AP GG G P G N G+N P GP P G P + PP
Sbjct: 140 PCTAAPGLGGPPGPPGQDGIPGNPGRNGEDGAPGPQGPSGPPGPPGQPGQPGQRGPP 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,207
Number of Sequences: 27780
Number of extensions: 159525
Number of successful extensions: 442
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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