Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N01
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 76 6e-15
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 51 2e-07
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.093
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.16
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch... 30 0.49
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 0.86
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.86
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 0.86
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 29 1.1
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.5
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 27 4.6
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 26 6.1
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 6.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 8.1
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 26 8.1
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 76.2 bits (179), Expect = 6e-15
Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEVXLPXGGK-VTFLXPPGH 798
V +MGHVDHGKTTLLDA R + + TE GGITQ IGAF V G K +TFL PGH
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGH 230
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGA 741
C++GHVD GKT LLD LR + V E E GGITQ IGA
Sbjct: 488 CILGHVDTGKTKLLDNLRRSNVQEGEAGGITQQIGA 523
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.093
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 7/156 (4%)
Frame = -1
Query: 779 NVTFPPXGXFTSKAPIC*VIPPNSVSTTAVSLRASSRVVFPWSTCPITHTXXXXXXXXXX 600
+ + PP G T+ P+ +PP S ST + ++ P+++ P+T T
Sbjct: 396 STSIPPTGNSTT--PVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTS 453
Query: 599 XXXXXXXXXXXXXXXXXXXXXXTNLNLHPD--ILTMSLTTCGLCMTVSFVYV-IPVLSAK 429
+ + + + LTT + S Y PV S+
Sbjct: 454 TSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSN 513
Query: 428 FSTLKTWSISFFSTSATSCT----VMFLQIPTTSEP 333
++ + ++ + T+CT V++ P TS P
Sbjct: 514 YTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTP 549
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDA-LRDTAVVETEFGGITQHIGAFEVXLPXG 765
++ HVDHGKTTL D+ L ++ ++ G + + E + G
Sbjct: 24 LLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG 67
>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 521 LHPDILTMSLTTCGLCMTVSFVYVIPVLS-AKFSTLKTWSISFFSTSATSCTVMFLQIPT 345
+HP ++ S CG+ + V +P++ +F S+SFFS + T +F +
Sbjct: 95 VHPWMIVFSFCVCGVSFLMGVVSSLPLIGRLEFLRNIRISLSFFSFFSILVTALFAHVAV 154
Query: 344 TS 339
+S
Sbjct: 155 SS 156
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VIAHVDHGKSTLTDSL 39
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.1 bits (62), Expect = 0.86
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEV 750
V+ H+DHGK+TL D + V E Q + EV
Sbjct: 63 VIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VIAHVDHGKSTLTDSL 39
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 640 MGHVDHGKTTLLDAL 684
+GHVDHGKTTL A+
Sbjct: 59 IGHVDHGKTTLTAAI 73
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 527 LNLHPDILTMSLTTCGLCMTVSFV-YVIPVLSAKFSTLKTWSISFFSTSATSCTVMFLQI 351
L +HP +L + + L + ++ + Y+ P ++ WSIS +TS +C ++ LQ+
Sbjct: 108 LQVHPVLLAIVVVFSTLSIVLTILKYLAPAY------IRQWSISCLTTSTAACLLLALQM 161
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 306 STLTYCCLFFLRSSFL--PAYYRYRNSSNFQIIICKCFYKTAD 184
ST YCC+ + L R N ++ + I+C CFY A+
Sbjct: 2402 STGFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGAN 2444
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 330 SWFRGCRNLEEHDST 374
SW R C N+E HD T
Sbjct: 54 SWLRLCSNIESHDET 68
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 480 IVYDCILCVCHSSFVSKI*HFKNMVNILF*HISNVLYCHVPP 355
+VY+ ++ +CH S S I HF + L +S++L ++ P
Sbjct: 464 LVYEELMKICHYSGDSDISHFPKLQTALVETVSDLLRENLTP 505
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIG 738
V ++ H+D GKTTL + + +GG T H G
Sbjct: 31 VGIIAHIDAGKTTLTEKM-------LYYGGFTSHFG 59
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V GH+ HGK+ LLD L
Sbjct: 145 VAGHLHHGKSALLDLL 160
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 494 LTTCGLCMTVSFVYVIPVLSAKFSTLKTWSI 402
+TTC +C Y P S + +L W I
Sbjct: 1 MTTCSICNESEIKYKCPKCSFPYCSLPCWKI 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,275
Number of Sequences: 5004
Number of extensions: 56953
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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