Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N01
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 85 7e-17
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 67 2e-11
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 53 3e-07
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 50 2e-06
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 50 3e-06
03_05_0511 + 25056018-25059107 33 0.30
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 33 0.39
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 32 0.69
02_04_0148 - 20198407-20201424 31 0.91
04_01_0103 + 1082077-1082167,1083037-1085477 30 2.8
02_04_0017 + 18937774-18937864,18938505-18940945 30 2.8
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 29 3.7
02_04_0462 + 23131433-23132836 29 3.7
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 29 4.9
01_06_0662 + 30987187-30987277,30987825-30990214 29 4.9
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 29 4.9
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 28 8.5
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 85.0 bits (201), Expect = 7e-17
Identities = 37/56 (66%), Positives = 43/56 (76%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEVXLPXGGKVTFLXPPGH 798
V +MGHVDHGKT+LLD+LR T+V E GGITQHIGAF V +P G +TFL PGH
Sbjct: 200 VTIMGHVDHGKTSLLDSLRQTSVAAKEAGGITQHIGAFVVEMPSGASITFLDTPGH 255
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEVXLPXGGK---VTFLXPPGH 798
V +MGHVDHGKTTLLD +R + VV +E GGITQ IGA++V + G FL PGH
Sbjct: 430 VTIMGHVDHGKTTLLDYIRKSKVVASEAGGITQGIGAYQVIVQVDGNPHACVFLDTPGH 488
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGA 741
C++GHVD GKT LLD +R T V E E GGITQ IGA
Sbjct: 703 CILGHVDTGKTKLLDCIRRTNVQEGEAGGITQQIGA 738
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGA 741
C++GHVD GKT LLD +R T V + + GGITQ IGA
Sbjct: 450 CILGHVDAGKTKLLDCIRHTNVQKGDAGGITQQIGA 485
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGA 741
C++GHVD GKT LLD +R T V E GGITQ IGA
Sbjct: 426 CILGHVDTGKTKLLDCIRCTNVQGGEAGGITQQIGA 461
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDAL 684
C++ HVDHGKTTL D L
Sbjct: 14 CILAHVDHGKTTLADHL 30
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL 684
V V+ HVDHGKTTL+D L
Sbjct: 67 VAVIAHVDHGKTTLMDRL 84
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 31.9 bits (69), Expect = 0.69
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVV 702
+ ++ HVDHGKTTL+D++ A V
Sbjct: 122 IAIVAHVDHGKTTLVDSMLRQAKV 145
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 31.5 bits (68), Expect = 0.91
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 634 CVMGHVDHGKTTLLDAL 684
C++ HVDHGKT+L D L
Sbjct: 20 CILAHVDHGKTSLADHL 36
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDALRDTA-VVETEFGG 720
V+ HVDHGK+TL D+L A ++ E G
Sbjct: 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDALRDTA-VVETEFGG 720
V+ HVDHGK+TL D+L A ++ E G
Sbjct: 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEVXLPXG 765
++ HVDHGK+TL D L + + G Q++ +V G
Sbjct: 62 IIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERG 104
>02_04_0462 + 23131433-23132836
Length = 467
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 640 MGHVDHGKTTLLDAL 684
+GHVDHGKTTL AL
Sbjct: 76 IGHVDHGKTTLTAAL 90
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL 684
V +GHVDHGKTTL A+
Sbjct: 70 VGTIGHVDHGKTTLTAAI 87
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VVAHVDHGKSTLTDSL 39
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VIAHVDHGKSTLTDSL 39
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 328 KAGSEVVGIWRNMTVQDVADVLKKDIDHVFKVLNFADK 441
K S+++ +WRN ++ +LK + V ++ ADK
Sbjct: 555 KLASKLLEVWRNYVNEEEGVILKPEASRVIYAVSLADK 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,401,020
Number of Sequences: 37544
Number of extensions: 366609
Number of successful extensions: 977
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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