Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_N01
(872 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 99 2e-21
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 55 6e-08
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 34 0.15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 31 1.4
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 31 1.4
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 31 1.4
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 2.5
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 2.5
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 3.3
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 3.3
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 29 4.3
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 29 4.3
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 29 4.3
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 29 4.3
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 29 4.3
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 29 4.3
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 29 4.3
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 29 4.3
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 28 7.6
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 99 bits (238), Expect = 2e-21
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 1/165 (0%)
Frame = +1
Query: 307 SAIRYSPKAGSEVVGIWRNMTVQDVADVLKKDIDHVFKVLNFADKTGM-TYTKDTVIHNP 483
+A+ S K+ + V +W+ M ++A L D+ + + L D+ + D+ + +
Sbjct: 52 AAVVKSTKSTKQTVDVWKQMNPSELAAALSVDLSEITEFLESLDRRNVDAIISDSPLDDV 111
Query: 484 QVVRDIVKISGCRFKLVARPDAEMKDEENKDXXXXXXXXXXXXXXXXXXVCVMGHVDHGK 663
+++ S + + V P + ++E+ D V +MGHVDHGK
Sbjct: 112 SILQTTAAFS-FKPRFVNGPPKKT-EKEDADLHPQLEASPKDLERRPPIVTIMGHVDHGK 169
Query: 664 TTLLDALRDTAVVETEFGGITQHIGAFEVXLPXGGKVTFLXPPGH 798
TTLLDA+R++ + EFGGITQHIGAF V L G +VTFL PGH
Sbjct: 170 TTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGH 214
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 55.2 bits (127), Expect = 6e-08
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFGGITQHIGAFEV 750
+CV+GHVD GKT +LD +R T V + E GGITQ IGA EV
Sbjct: 487 ICVLGHVDTGKTKMLDTIRRTNVQQGEAGGITQQIGATEV 526
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL-RDTAVVETEFGGITQHIGAFE 747
VC++ HVDHGKT+ D+L AV+ + G +++ + E
Sbjct: 23 VCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSRE 62
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL-RDTAVVETEFGGITQHIGAFE 747
VC++ HVDHGKT+ D+L AV+ + G +++ + E
Sbjct: 23 VCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSRE 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFG 717
V +GHVDHGKTTL A+ T ++ T G
Sbjct: 52 VGTIGHVDHGKTTLTSAI--TKILATSKG 78
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFG 717
V +GHVDHGKTTL A+ T ++ T G
Sbjct: 53 VGTIGHVDHGKTTLTSAI--TKILATSKG 79
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRDTAVVETEFG 717
V +GHVDHGKTTL A+ T ++ T G
Sbjct: 53 VGTIGHVDHGKTTLTSAI--TKILATSKG 79
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRD 690
V + GH+ HGKTT LD L +
Sbjct: 135 VAIAGHLHHGKTTFLDCLME 154
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDALRD 690
V + GH+ HGKTT LD L +
Sbjct: 10 VAIAGHLHHGKTTFLDCLME 29
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL 684
V +GH+DHGKTTL A+
Sbjct: 48 VGTIGHIDHGKTTLTSAI 65
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 631 VCVMGHVDHGKTTLLDAL 684
V +GH+DHGKTTL A+
Sbjct: 48 VGTIGHIDHGKTTLTSAI 65
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VIAHVDHGKSTLTDSL 39
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 586 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 638
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 586 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 638
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 770 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 822
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 770 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 822
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 637 VMGHVDHGKTTLLDAL 684
V+ HVDHGK+TL D+L
Sbjct: 24 VIAHVDHGKSTLTDSL 39
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 586 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 638
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 VVCWKKRRSEEEKAAVSQGRSAIRYSPKAGSEVVGIWRNMTVQD-VADVLKKDID 408
+V WK EE A ++Y PK + VG W+ + V+D AD + ++D
Sbjct: 770 IVQWKPMSREEWNGA--DFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLD 822
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 682 LRDTAVVETEFGGITQHIGAFEV 750
+R T V + E GGITQ IGA EV
Sbjct: 656 IRRTNVQQGEAGGITQQIGATEV 678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,283
Number of Sequences: 27780
Number of extensions: 334506
Number of successful extensions: 908
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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