Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_N01
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...   123   2e-30
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score =  123 bits (296), Expect = 2e-30
 Identities = 65/152 (42%), Positives = 93/152 (61%)
 Frame = +1

Query: 343 VVGIWRNMTVQDVADVLKKDIDHVFKVLNFADKTGMTYTKDTVIHNPQVVRDIVKISGCR 522
           V+ IW  MTV+++A+  K+DI+ V  VL F +K    Y ++T++    ++ ++VK  G +
Sbjct: 55  VIEIWDQMTVKELANSAKRDINDVLNVLYFINKNDK-YEENTILTTMPLLINVVKYLGGK 113

Query: 523 FKLVARPDAEMKDEENKDXXXXXXXXXXXXXXXXXXVCVMGHVDHGKTTLLDALRDTAVV 702
            K +++     K  ENKD                  V +MGHVDHGKTTLLDALR+T++ 
Sbjct: 114 HKFISKKIK--KTMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171

Query: 703 ETEFGGITQHIGAFEVXLPXGGKVTFLXPPGH 798
           ++EFGGITQ IGAF+V L  G +VTFL  PGH
Sbjct: 172 KSEFGGITQCIGAFDVTLESGERVTFLDTPGH 203


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 640 MGHVDHGKTTLLDALRDTAVV 702
           +GHV HGK+T++ A+     V
Sbjct: 48  IGHVAHGKSTIVKAISGVQTV 68


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 387 ISNVLYCHVPPNSYNL*TSFWRISDCRSTLTYCCLFFL---RSSFLPAYYRYRNSS---N 226
           +   + C +P  +  L  +F R  +C     +  LF+L    S+  P  Y   +      
Sbjct: 15  VGGFILCWLPFFTMYLVRAFCR--NCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFA 72

Query: 225 FQIIICKCFYK 193
           F+ IICKCF K
Sbjct: 73  FKSIICKCFCK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 387 ISNVLYCHVPPNSYNL*TSFWRISDCRSTLTYCCLFFL---RSSFLPAYYRYRNSS---N 226
           +   + C +P  +  L  +F R  +C     +  LF+L    S+  P  Y   +      
Sbjct: 463 VGGFILCWLPFFTMYLVRAFCR--NCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFA 520

Query: 225 FQIIICKCFYK 193
           F+ IICKCF K
Sbjct: 521 FKSIICKCFCK 531


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 631 VCVMGHVDHGKTT 669
           + V+GHVD GK+T
Sbjct: 10  IVVIGHVDSGKST 22


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 631 VCVMGHVDHGKTT 669
           + V+GHVD GK+T
Sbjct: 10  IVVIGHVDSGKST 22


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 492 DHLWIVYDCILCVCH 448
           DH W  YD + C  H
Sbjct: 162 DHTWWPYDILNCTIH 176


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 639 DGACGPRKNYSTRCSQGHSGSGNRVWG 719
           D  CG  +NY   C++G   S N+  G
Sbjct: 66  DELCGGPQNYLGICAEGMQCSCNKCIG 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,489
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)