Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M24
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    29   0.92 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   6.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   8.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   8.6  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 791 VHTAPAWSERPTPKLRYLQREL*ESATLPEGRKAXQVFR*AAGVGTGERTRELP 630
           +H AP  S  P P++    + +  S+TLP   K+ QVF  A+     +   +LP
Sbjct: 189 IHDAPYSSPFPPPRIVLGSKPV-SSSTLPSKPKSFQVFSDASSSRDSQNASDLP 241


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 661 TPAAYRNTXSAFLPSGSVALSHSSRCRYLSFGVGRSLQAGAVCTNPPFSPTA-APYPVXI 837
           +P  YR   S FL    +AL++S+      +     +QA A   NP ++PT    Y + +
Sbjct: 120 SPPKYRAFLSWFL-GYVLALAYSTGFASTIYAAAGLVQATASVANPSYAPTKYEEYGIYV 178

Query: 838 VLS 846
            LS
Sbjct: 179 ALS 181


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 667 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGK 527
           QG+  +SAR S+ G+  GI  +L   + S    DF +    G G +G+
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGE 569


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 579 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPE 680
           + + K D ++ IPGV  +      S  DPC  P+
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 622 FPPGSSLVRSPVPTPAAYRNTXSAFLPSGSVALSHSSRCRYLSFGVGRSLQAGA 783
           F P S  + +   +P++     ++FLPSGSV+   S    YL   VG   +A A
Sbjct: 184 FLPVSRAIAASEISPSSSPQLLTSFLPSGSVSNPSSP---YLQGSVGALYEADA 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,466
Number of Sequences: 5004
Number of extensions: 67756
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)