Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_M24
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 0.97
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380 29 3.9
03_06_0032 + 31182115-31182390,31182801-31183459,31183597-311837... 29 5.2
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.8
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.8
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.0
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 28 9.0
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310... 28 9.0
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 31.5 bits (68), Expect = 0.97
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 667
CWR + T D Q + +KD P + PSC L+F PL
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 332
>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
Length = 356
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -1
Query: 801 RGVRAHSPSLERTTYTETEIPTA*AMRKRHASRREKG----GXGIPVSGRGRNRRAHEGA 634
RG A T T T + RK +R++G G G GRGR RR G
Sbjct: 23 RGTAAGGRRTAARTGTATHPKRRRSARKGDEKKRKEGEILTGSGGRRGGRGRRRRLPNGG 82
Query: 633 SRGKR 619
RG+R
Sbjct: 83 LRGRR 87
>03_06_0032 +
31182115-31182390,31182801-31183459,31183597-31183740,
31184025-31184061
Length = 371
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 631 GSSLVRSPVPTPAAYRNTXSAFLPSGSVALSHSSRCRYLSFGVGRSLQAGAVCTNPPFSP 810
G + + P +P R +P G VA + S S+ L AGAV P
Sbjct: 10 GGGMQQQPFTSPGQERVFDGGGVP-GQVAAPYGSDFDQSSYMA--LLAAGAVGVGVGVQP 66
Query: 811 TAAPYPV--XIVLSPPG 855
TAAP+ V + +PPG
Sbjct: 67 TAAPWAVEEDVAAAPPG 83
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 154 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 53
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 350 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 505
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 28.3 bits (60), Expect = 9.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +1
Query: 625 PPGSSLVRSPVPTPAAYRNTXSAFLPSGSVALSHSSRCRYLSFGVGRSLQAGAVCTNPPF 804
PP ++ SP P A RN P S++ HSS G+G + + +
Sbjct: 50 PPATAASSSPAPGGGAGRNKLPPKSP--SISSFHSSPTSSRLAGLGGLIDPRRILSPGRV 107
Query: 805 SP-----TAAPYPVXIVLSPP 852
SP +A P P+ + L PP
Sbjct: 108 SPIDLDDSAPPLPLPLPLPPP 128
>05_07_0258 -
28729620-28729782,28730193-28730339,28730808-28731032,
28731148-28731178,28731424-28731940
Length = 360
Score = 28.3 bits (60), Expect = 9.0
Identities = 28/96 (29%), Positives = 39/96 (40%)
Frame = +1
Query: 592 NPTGL*RYQAFPPGSSLVRSPVPTPAAYRNTXSAFLPSGSVALSHSSRCRYLSFGVGRSL 771
NP + + +F S ++PV T + T A L S + SS C+Y S G S+
Sbjct: 134 NPNTVRDHASFAFNSYYQKNPVQTSCDFAGT--AILTSTDPS---SSSCKYPSTSTGASV 188
Query: 772 QAGAVCTNPPFSPTAAPYPVXIVLSPPG*XXLIAPG 879
+ TNP F P SPP + PG
Sbjct: 189 LNTSTPTNPAFGGYDNSPPGFGNNSPPLYGSMSPPG 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,585,239
Number of Sequences: 37544
Number of extensions: 565878
Number of successful extensions: 1909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -