Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M24
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    30   2.7  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    29   6.1  

>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
           protein F15E6.1 protein.
          Length = 1655

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +1

Query: 553 EHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTPAAYRNTXS-AFLPSGSVALSHS 729
           +HH      QR R  +G  RY A      L + P P P+ +++T S A  P G       
Sbjct: 709 QHHHQMPMDQRKRPSSG--RYDALMGAMPLQQQPPPPPSQFQHTDSIAHRPRG-----RP 761

Query: 730 SRCRYLSFGVGRSLQAGAVCTNPPFSPTAA 819
              R+ S  V +  ++G   T PP + T A
Sbjct: 762 KGTRHPSVAV-QPQRSGGARTLPPRAQTVA 790


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 591 KPDRTIKIPGVSPWKLPRALSCSDPCRLPEYLXR 692
           K   +I +PGV   ++    S  DPC LP+ + +
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKK 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,333,870
Number of Sequences: 27780
Number of extensions: 417135
Number of successful extensions: 1135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)